Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0054
(573 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P03040 Cluster: Regulatory protein cro; n=14; root|Rep:... 108 8e-23
UniRef50_P03042 Cluster: Regulatory protein CII; n=11; root|Rep:... 107 1e-22
UniRef50_P03041 Cluster: Transcriptional activator protein C1; n... 68 1e-10
UniRef50_Q5PF52 Cluster: Transcriptional activator-regulatory pr... 53 4e-06
UniRef50_Q5QF79 Cluster: Cro-like protein; n=2; root|Rep: Cro-li... 50 5e-05
UniRef50_A6STU3 Cluster: Prophage Pfl 6 Cro repressor; n=1; Pseu... 47 4e-04
UniRef50_Q87Y09 Cluster: Regulatory protein Cro; n=1; Pseudomona... 44 0.002
UniRef50_A3KHW7 Cluster: Putative uncharacterized protein; n=1; ... 37 0.39
UniRef50_A1ZQL4 Cluster: Tetratricopeptide repeat domain protein... 33 4.8
UniRef50_Q6L1I1 Cluster: Type II restriction modification system... 33 6.3
UniRef50_UPI0000D564EE Cluster: PREDICTED: similar to CG2052-PB,... 32 8.3
UniRef50_Q0JCY3 Cluster: Os04g0443700 protein; n=5; Oryza sativa... 32 8.3
UniRef50_A7EDD6 Cluster: Putative uncharacterized protein; n=1; ... 32 8.3
>UniRef50_P03040 Cluster: Regulatory protein cro; n=14; root|Rep:
Regulatory protein cro - Bacteriophage lambda
Length = 66
Score = 108 bits (260), Expect = 8e-23
Identities = 52/54 (96%), Positives = 52/54 (96%)
Frame = +2
Query: 2 RFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKXFPSNXKTTA 163
RFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVK FPSN KTTA
Sbjct: 13 RFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPSNKKTTA 66
>UniRef50_P03042 Cluster: Regulatory protein CII; n=11; root|Rep:
Regulatory protein CII - Bacteriophage lambda
Length = 97
Score = 107 bits (258), Expect = 1e-22
Identities = 55/79 (69%), Positives = 57/79 (72%)
Frame = +3
Query: 336 LTKSQCLELRRQRKLWGVDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVARF 515
L K L + + GVDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVA
Sbjct: 18 LNKIAMLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVAAI 77
Query: 516 SPIKNARRQXERSEQIQME 572
K ERSEQIQME
Sbjct: 78 LTNKKRPAATERSEQIQME 96
Score = 71.3 bits (167), Expect = 1e-11
Identities = 46/86 (53%), Positives = 49/86 (56%)
Frame = +2
Query: 284 MVRANKRNEALRIESALLNKIAMLGTEKTAEAVGR**VADQQVEEGLDSKVLNAACCS*M 463
MVRANKRNEALRIESALLNKIAMLGTEKTAEAVG + + K
Sbjct: 1 MVRANKRNEALRIESALLNKIAMLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVLEW 60
Query: 464 XXXXXXXXSIGATSCAILTNKKRPAA 541
+ AILTNKKRPAA
Sbjct: 61 GVVDDDMARLARQVAAILTNKKRPAA 86
>UniRef50_P03041 Cluster: Transcriptional activator protein C1;
n=12; root|Rep: Transcriptional activator protein C1 -
Bacteriophage P22
Length = 92
Score = 68.1 bits (159), Expect = 1e-10
Identities = 32/55 (58%), Positives = 44/55 (80%), Gaps = 3/55 (5%)
Frame = +3
Query: 354 LELRRQRKL---WGVDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVA 509
+ +R QRK+ G+++SQISRWK D+IPK MLLAVLEWGV D+++A LA++VA
Sbjct: 21 IAIRGQRKVADALGINESQISRWKGDFIPKMGMLLAVLEWGVEDEELAELAKKVA 75
>UniRef50_Q5PF52 Cluster: Transcriptional activator-regulatory
protein; n=7; root|Rep: Transcriptional
activator-regulatory protein - Salmonella paratyphi-a
Length = 93
Score = 53.2 bits (122), Expect = 4e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Frame = +3
Query: 291 VQTNATRLYESRVRCLTKSQCLELRRQRKLWGVDKSQISRWKRDWIPKFSMLLAVLEWGV 470
V T + + L K + + K GV + Q+SRWK + + SM+LAVLE+G+
Sbjct: 4 VATKSKKAARIESTLLNKLAMMGQKTFAKAMGVPEYQVSRWKNGFFSQVSMMLAVLEYGI 63
Query: 471 VDDDMARLARQVARFSPIKNARRQXE 548
D++MA L R++A + + A + E
Sbjct: 64 EDEEMAELTRRLAIYLTKEKAPKNGE 89
Score = 37.1 bits (82), Expect = 0.29
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +2
Query: 287 VRANKRNEALRIESALLNKIAMLGTEKTAEAVG 385
V A K +A RIES LLNK+AM+G + A+A+G
Sbjct: 3 VVATKSKKAARIESTLLNKLAMMGQKTFAKAMG 35
>UniRef50_Q5QF79 Cluster: Cro-like protein; n=2; root|Rep: Cro-like
protein - Pseudomonas phage F116
Length = 66
Score = 49.6 bits (113), Expect = 5e-05
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +2
Query: 8 GQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKXFPS 145
GQ K A+ LGV Q AI+KA+ AGRKI + DGS AEEV+ FP+
Sbjct: 14 GQAKAAELLGVTQGAISKALRAGRKINVYRCEDGSYSAEEVRAFPA 59
>UniRef50_A6STU3 Cluster: Prophage Pfl 6 Cro repressor; n=1;
Pseudomonas fluorescens Pf-5|Rep: Prophage Pfl 6 Cro
repressor - Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477)
Length = 67
Score = 46.8 bits (106), Expect = 4e-04
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +2
Query: 11 QTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKXFPSNXKTTA 163
Q+ A LGV QSAI++ + AGR I +T+ DG V A E++ P+ K TA
Sbjct: 16 QSALAAALGVNQSAISQMVRAGRSIEITLYEDGRVEANEIRPIPARPKRTA 66
>UniRef50_Q87Y09 Cluster: Regulatory protein Cro; n=1; Pseudomonas
syringae pv. tomato|Rep: Regulatory protein Cro -
Pseudomonas syringae pv. tomato
Length = 76
Score = 44.4 bits (100), Expect = 0.002
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +2
Query: 2 RFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKXFPS 145
+ GQ + A+ LG ++I KA+ A R I ++++ DGS A+EV+ FPS
Sbjct: 12 KIGQARVARALGCKPASIAKALKARRNIEVSVDTDGSCIAQEVRPFPS 59
>UniRef50_A3KHW7 Cluster: Putative uncharacterized protein; n=1;
Streptomyces ambofaciens ATCC 23877|Rep: Putative
uncharacterized protein - Streptomyces ambofaciens ATCC
23877
Length = 959
Score = 36.7 bits (81), Expect = 0.39
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = -2
Query: 536 PGVFYW*ESRNLSRQSSHVVVNDPPFKNSKQH*ELWNPVPLPPADLRLINAP 381
PG +YW NL R +H VV+DP FK+ H L + +P PA R+ P
Sbjct: 528 PGFYYWESLENLYRHQAH-VVSDPDFKDYMLH--LASQMPATPALSRMQPPP 576
>UniRef50_A1ZQL4 Cluster: Tetratricopeptide repeat domain protein;
n=3; Microscilla marina ATCC 23134|Rep:
Tetratricopeptide repeat domain protein - Microscilla
marina ATCC 23134
Length = 662
Score = 33.1 bits (72), Expect = 4.8
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 209 KLNHTYGVCIYLHTFINCYLRKY-LHMVRANKRNEALRIESALLNKIAMLGTE 364
KLN+ YGV LH I CY K + V ++ +AL I L +K+ M TE
Sbjct: 278 KLNNQYGVARLLHN-IGCYYYKLKKYNVAHSQLTKALNIRRKLKSKMGMASTE 329
>UniRef50_Q6L1I1 Cluster: Type II restriction modification system,
restriction subunit; n=2; Thermoplasmatales|Rep: Type II
restriction modification system, restriction subunit -
Picrophilus torridus
Length = 205
Score = 32.7 bits (71), Expect = 6.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 378 LWGVDKSQISRWKRDWIPKFSMLLAVLEWG 467
+W VD + + W PK+ M+LA + WG
Sbjct: 95 IWTVDSEKAKLFLETWRPKYDMILAHINWG 124
>UniRef50_UPI0000D564EE Cluster: PREDICTED: similar to CG2052-PB,
isoform B; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG2052-PB, isoform B - Tribolium castaneum
Length = 845
Score = 32.3 bits (70), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 166 NNPALTHSSPEKGHQIKPHLWCMHLFAYI 252
NNPA+ ++P GH I P++ C F I
Sbjct: 29 NNPAIALATPSTGHHIHPYVGCAFFFRQI 57
>UniRef50_Q0JCY3 Cluster: Os04g0443700 protein; n=5; Oryza
sativa|Rep: Os04g0443700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 421
Score = 32.3 bits (70), Expect = 8.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 348 QCLELRRQRKLWGVDKSQISRWKRDWIPKFSMLLAVLEWGV 470
Q L RR+R + + Q+S + W+ + +++L L WGV
Sbjct: 140 QLLIKRRRRNYYQANDEQLSYFNGPWLTRITLILVALWWGV 180
>UniRef50_A7EDD6 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 355
Score = 32.3 bits (70), Expect = 8.3
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -1
Query: 486 PCRRQRPPIQEQQAALRTLESSPSSTC*SATYQRPTASAVFSV-PSIAILLSNALSIRRA 310
P PP + AA + +ESSPSS P +SA ++ PS + ++A + +A
Sbjct: 157 PTTTPAPPATTEAAAAKIVESSPSSVA-PVVESTPVSSATDALTPSAVVAHNDARASHQA 215
Query: 309 SLRLFARTICKY 274
S + +T+ Y
Sbjct: 216 STMSWNQTLADY 227
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,496,688
Number of Sequences: 1657284
Number of extensions: 12010324
Number of successful extensions: 31689
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 30739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31675
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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