Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0054
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    27   1.5  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   1.5  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    27   2.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   3.4  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   6.0  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    25   7.9  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   7.9  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   7.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   7.9  

>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 406 AGGRGTGFQSSQCCLLFLNGGSLTTTWLDWRDKLR 510
           +G R T        L + N G+ T +WL+W DK++
Sbjct: 135 SGRRSTTASDILTKLGYKNIGNYTGSWLEWSDKIK 169


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 393 KSQISRWKRDWIPKFSMLLAVLEW 464
           KS IS W  D+ P F+ +  VL W
Sbjct: 50  KSSISEWTLDYPPFFAYMECVLSW 73


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 151 KNNSINNPALTHSSPEKGHQIKPHLWCMHLFAYIHQLLSKEILTYGSCKQTQRGSTNR 324
           + NS  +P  T  S E      P +  +   +   + L + IL YGSCK ++ G   R
Sbjct: 4   RKNSPASPKPTSRSRESSRS--PSVTDLKDHSKAKRTLCRNILLYGSCKHSENGCAFR 59


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 493 NRAMSSSTTPHSRTASSI 440
           N+++  +TTPH R ASSI
Sbjct: 304 NQSLDCNTTPHRRNASSI 321


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -2

Query: 509 RNLSRQSSHVVVNDPPFKNSKQH*ELWNPVPLPPADLRLINAPQLPL 369
           R+ SR S+       P    +      NPV  PP +  L+  P  P+
Sbjct: 201 RSNSRSSARSTARSAPRSTQRSRSSSANPVTTPPVNNTLLTPPAPPV 247


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = -3

Query: 523 IGENRATCRANRAMSSSTTPHSRTASSIENFGIQSLFHLLICDLSTPHSFRCLLSSKHCD 344
           + ++ +T   N ++  ++   S+    + +  I+ L   ++ D +TPH F   LS K   
Sbjct: 319 VKKSDSTVLGNTSIPKNSIISSQNKEELPS-SIKYLEKTIMSDQATPHPFSKSLSEKGSS 377

Query: 343 FVKQRTLD 320
           + K  T D
Sbjct: 378 YHKSLTSD 385


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 220 HLWCMHLFAYIHQLLSKEILTYGSCKQT 303
           H+W       +H+LL+K  L+   CKQT
Sbjct: 338 HIWSEEGRKRLHKLLAKMGLSLVECKQT 365


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 484 MSSSTTPHSRTASSIENFGIQSLFHLLI-CDLSTPHSFRCLLSSKHCDFVKQRTL 323
           ++ +TTP+    S +   G +SL HL   C LS   +F C   +  CD  K+  L
Sbjct: 844 VTDTTTPYLSDFSLVNESG-RSLLHLTAACGLSNASTFLC---NAGCDVNKRDAL 894


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 439 ENFGIQSLFHLLICDLSTPHSFRCLLSSKH 350
           +NF I    H L+  L +  +FR LL + H
Sbjct: 450 DNFSITKEIHSLLSPLESSSAFRLLLLNMH 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,381
Number of Sequences: 5004
Number of extensions: 51127
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)