Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0054
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0006 - 22102663-22103705,22105659-22105671                       32   0.28 
02_02_0662 - 12736904-12737214,12737632-12737914                       29   3.5  
02_03_0151 - 15759254-15760459                                         28   4.6  
02_03_0053 - 14475106-14475126,14475171-14475512,14475969-144760...    28   4.6  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    28   4.6  
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547           28   4.6  
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959...    27   8.0  

>04_04_0006 - 22102663-22103705,22105659-22105671
          Length = 351

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 348 QCLELRRQRKLWGVDKSQISRWKRDWIPKFSMLLAVLEWGV 470
           Q L  RR+R  +  +  Q+S +   W+ + +++L  L WGV
Sbjct: 70  QLLIKRRRRNYYQANDEQLSYFNGPWLTRITLILVALWWGV 110


>02_02_0662 - 12736904-12737214,12737632-12737914
          Length = 197

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 367 DSGSCGALISRRSAGGRGTGFQSSQCCLLFLNGGSLT--TTW 486
           D+G CGA+ S R   GRG    S   C   L+GG  +   TW
Sbjct: 153 DAGGCGAVYSARRLAGRGRRC-SGPTCRERLDGGGASGHQTW 193


>02_03_0151 - 15759254-15760459
          Length = 401

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 366 RQRKLWGVDKSQISRWKRDWIP 431
           R  K WG   S  SRW+ +W+P
Sbjct: 350 RHEKTWGKRSSGGSRWEWEWLP 371


>02_03_0053 -
           14475106-14475126,14475171-14475512,14475969-14476099,
           14476198-14477230,14477495-14477702,14477761-14477807,
           14477906-14477971,14478644-14478804,14478985-14479118,
           14479244-14479452
          Length = 783

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 35  GVYQSAINKAIHAGRKIFLTINADGSVYAEEVKXFPSNXKTT 160
           G+Y + +   +H     ++T N DG++  E+V   PS+ +TT
Sbjct: 389 GIYPAVLQLQLHLPNMQYVTYNEDGNL--EDVVNRPSSTRTT 428


>02_03_0026 -
           14045653-14045874,14047023-14047215,14047518-14047618,
           14050145-14050272,14050409-14050502,14050749-14051237,
           14052622-14052915,14053602-14053732,14053829-14055440,
           14055539-14055651,14055902-14056933,14057023-14057145,
           14057250-14057688
          Length = 1656

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 35  GVYQSAINKAIHAGRKIFLTINADGSVYAEEVKXFPSNXKTT 160
           G+Y + +   +H     ++T N DG++  E+V   PS+ +TT
Sbjct: 876 GIYPAVLQLQLHLPNMQYVTYNEDGNL--EDVVNRPSSSRTT 915


>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
          Length = 388

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 483 CRRQRPPIQEQQAALRTLESSPSSTC 406
           CR Q+ PI+E+     T+ SSP S+C
Sbjct: 347 CRDQQIPIEEEAENNTTIVSSPPSSC 372


>07_03_1748 -
           29195037-29195427,29195552-29195679,29195810-29195938,
           29196334-29196412,29196508-29196671,29196754-29196936,
           29197021-29197146,29197237-29197328,29197412-29197508,
           29198013-29198339
          Length = 571

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/57 (31%), Positives = 22/57 (38%)
 Frame = -1

Query: 537 AGRFLLVRIAQLVAPIEPCRRQRPPIQEQQAALRTLESSPSSTC*SATYQRPTASAV 367
           AG F   R      PI P R   P  Q       T  +SP S+  S+    P A +V
Sbjct: 45  AGLFKRRRDEPTPTPIPPARAATPSSQADDVPTTTTATSPPSSAPSSPPSSPPAESV 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,036
Number of Sequences: 37544
Number of extensions: 354528
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)