Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0054
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)                 29   2.7  
SB_38003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               28   6.2  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         28   6.2  
SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)
          Length = 658

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +2

Query: 224 YGVCIYLHTFINCYLRKYLHMVRANKRNEALRIESALLNKIAML 355
           + + +YL T I  Y++ +L  VR+N+    +R E AL  KIA+L
Sbjct: 513 FAIILYLIT-IPLYIKIFL-FVRSNQLQRGVRKEGALAKKIAIL 554


>SB_38003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 514 NRATCRANRAMSSSTTPHSRTASSIENFGIQSLFHLLICDLSTPHSF 374
           +R TC++N +++     H  T  SI +     +FH + C  S   +F
Sbjct: 268 HRITCQSNGSLTFYQVFHRVTCQSIGSLTFYQVFHRITCQSSGSLTF 314


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 486 PCRRQRPPIQEQQAALRTLESSPS----STC*SATYQRPTAS 373
           P R  + P+QEQ +  R  E+SP     +T  SA+Y+ P AS
Sbjct: 818 PGRASQLPLQEQSSGSRAEEASPPPALVATGPSASYRLPNAS 859


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 11  QTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKXFP 142
           Q    KDL  Y+SA+ +     +++F  +       A+E++ FP
Sbjct: 72  QVVNGKDLKEYESAVQEVYDDAKRVFSYLKEAKKQRAKEIQVFP 115


>SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 239 YLHTFINCYLRKYLHMVRANKRN 307
           Y H+   CY  K  H++R +K+N
Sbjct: 279 YYHSKYKCYRNKISHLIRTSKQN 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,305,689
Number of Sequences: 59808
Number of extensions: 393306
Number of successful extensions: 1031
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)