Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0054
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF045646-5|AAK29828.1|  225|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical p...    27   7.2  
AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin ...    27   7.2  
AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like ...    27   7.2  
AL021503-7|CAI79271.1|  277|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (...    27   9.5  

>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 423 SPSSTC*SATYQRPTASAVFSVPSIAILLSNAL 325
           +P+ST  + TY  PT     ++PS  I+LS +L
Sbjct: 851 TPTSTSMTTTYNWPTGGTTRTLPSGEIILSESL 883


>AF045646-5|AAK29828.1|  225|Caenorhabditis elegans Hypothetical
           protein F56B3.3 protein.
          Length = 225

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 172 PALT-HSSPEKGHQIKPH--LWCMHLFAYIHQLLSKEILTY 285
           P+L+  SSP  G   KP+  L+  H   ++HQLL  E+L +
Sbjct: 52  PSLSASSSPAPGSARKPYFFLYIFHHHQHLHQLLHLELLDF 92


>Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 LLHIPALKKGIKLNHTYGVCIYLHTFINCYLRKYLHMVRANKRNE 310
           L+H  ALK   +L  + G    + T +  + RK   M RA+ RN+
Sbjct: 473 LMHTSALKAFDQLTTSQGAADEMQTDLRAFWRKVDEMERADDRNK 517


>Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 LLHIPALKKGIKLNHTYGVCIYLHTFINCYLRKYLHMVRANKRNE 310
           L+H  ALK   +L  + G    + T +  + RK   M RA+ RN+
Sbjct: 473 LMHTSALKAFDQLTTSQGAADEMQTDLRAFWRKVDEMERADDRNK 517


>AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin
           BMK-1 protein.
          Length = 958

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 LLHIPALKKGIKLNHTYGVCIYLHTFINCYLRKYLHMVRANKRNE 310
           L+H  ALK   +L  + G    + T +  + RK   M RA+ RN+
Sbjct: 473 LMHTSALKAFDQLTTSQGAADEMQTDLRAFWRKVDEMERADDRNK 517


>AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like
           protein KLP-14 protein.
          Length = 958

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 LLHIPALKKGIKLNHTYGVCIYLHTFINCYLRKYLHMVRANKRNE 310
           L+H  ALK   +L  + G    + T +  + RK   M RA+ RN+
Sbjct: 473 LMHTSALKAFDQLTTSQGAADEMQTDLRAFWRKVDEMERADDRNK 517


>AL021503-7|CAI79271.1|  277|Caenorhabditis elegans Hypothetical
           protein Y68A4A.10b protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 504 LVAPIEPCRRQRPP 463
           LV P EPC R RPP
Sbjct: 9   LVQPTEPCMRMRPP 22


>AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical
           protein Y68A4A.10a protein.
          Length = 459

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 504 LVAPIEPCRRQRPP 463
           LV P EPC R RPP
Sbjct: 9   LVQPTEPCMRMRPP 22


>AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (grd
           related) protein18 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 539 PPGVFY-W*ESRNLSRQSSHVVVNDPPFKNSKQH*ELWNPVPLPPADLRLINAP 381
           PP V Y   +++   + SS  + N PPF  S     L+   P  P D  ++N P
Sbjct: 68  PPSVIYPSYQNQQPLQPSSSYLANIPPFMQSYPQPPLFTTPPPLPQDNSILNYP 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,487
Number of Sequences: 27780
Number of extensions: 292055
Number of successful extensions: 786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)