Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0054
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   1.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 245 HTFINCYLRKYLHMVRANKRNEALRIESALLN 340
           + F NC L+K   +++ N  N+  +    LLN
Sbjct: 52  NVFANCELQKLRLLLQGNINNQLFQTPCELLN 83


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 85  NLSACMNGLVDRALIYAEIFSCLGL 11
           N++AC     +R L+ A    C G+
Sbjct: 198 NMTACGTDYFNRGLLSASYLVCYGI 222


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 85  NLSACMNGLVDRALIYAEIFSCLGL 11
           N++AC     +R L+ A    C G+
Sbjct: 74  NMTACGTDYFNRGLLSASYLVCYGI 98


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 287 VRANKRNEALRIESALLNKIA 349
           + ANK ++A  I S+ L KIA
Sbjct: 482 ISANKASKAFGIPSSTLYKIA 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,025
Number of Sequences: 438
Number of extensions: 3634
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)