Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0054
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01220.1 68414.m00036 GHMP kinase-related contains similarity...    31   0.55 
At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zi...    28   5.1  
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR...    27   6.7  
At4g33140.1 68417.m04721 expressed protein                             27   8.9  
At1g40390.1 68414.m04790 hypothetical protein                          27   8.9  

>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to
           L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647
          Length = 1055

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -3

Query: 463 HSRTASSIENFGIQSL---FHLLICDLSTPHSFRCLLSSKHC 347
           +  T S     G QS+    H+   DL TP SFR +L  +HC
Sbjct: 414 YDSTVSGAVQIGSQSIVVGIHIPSEDLGTPESFRFMLPDRHC 455


>At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 736

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 393 KSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVAR 512
           K++  R K  W  K   L+A  E    D+DM RLA Q  R
Sbjct: 453 KNKTERRKLQW-QKHKNLMATQEQNKADEDMMRLAEQQQR 491


>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1165

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -3

Query: 412  HLLICDLSTPHSFRCL--LSSKHCDF 341
            H+ I  +S+PHS RCL   +S  C+F
Sbjct: 1029 HVFIAYISSPHSIRCLEEKNSDKCNF 1054


>At4g33140.1 68417.m04721 expressed protein
          Length = 353

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 358 N*EDSGSCGALISRRSAGGRGTGFQSSQC 444
           N  +SGSC  L   +  GG+  GF    C
Sbjct: 63  NNNNSGSCNGLFKVKGGGGKPKGFTLRSC 91


>At1g40390.1 68414.m04790 hypothetical protein
          Length = 426

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 459 QEQQAALRTLESSPSSTC*SATYQRPTASAVFSVPS 352
           Q+    LR L+ +  + C  AT+  PTASA+F  PS
Sbjct: 178 QQDNPILRKLDRAIVNGCWLATF--PTASAIFDPPS 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,780,948
Number of Sequences: 28952
Number of extensions: 276184
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)