Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0053
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 157 1e-39
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 95 1e-20
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 89 7e-19
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 88 1e-18
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 87 2e-18
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 81 1e-16
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 76 4e-15
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 75 1e-14
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 48 1e-06
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 46 5e-06
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 45 9e-06
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 44 2e-05
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 42 8e-05
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 41 2e-04
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 40 4e-04
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 38 0.001
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 36 0.006
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 33 0.052
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 28 1.1
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 27 1.9
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 27 2.6
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.6
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 27 3.4
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 26 5.9
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 5.9
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 26 5.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 7.8
SPAC227.04 |||autophagy C terminal domain family protein|Schizos... 25 7.8
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 157 bits (381), Expect = 1e-39
Identities = 73/84 (86%), Positives = 78/84 (92%)
Frame = +3
Query: 3 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 182
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA++VYDITN NSF T
Sbjct: 44 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTE 103
Query: 183 KWIDDVRTERGSDVIIMLVGNKTD 254
KWI+DVR ERG DVII+LVGNKTD
Sbjct: 104 KWIEDVRAERGDDVIIVLVGNKTD 127
Score = 79.4 bits (187), Expect = 5e-16
Identities = 41/79 (51%), Positives = 59/79 (74%)
Frame = +2
Query: 233 VGRQQDRFSDKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSAEN 412
VG + D +DKRQV+ EEG+KKAKEL +M +ETSAKAG+NVK LFR++A LPGM++ E
Sbjct: 122 VGNKTD-LADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVET 180
Query: 413 KPPEDMHEVILRQSPGDNK 469
+ + M +V ++ P +N+
Sbjct: 181 QSTQ-MIDVSIQ--PNENE 196
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 94.7 bits (225), Expect = 1e-20
Identities = 36/84 (42%), Positives = 62/84 (73%)
Frame = +3
Query: 3 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 182
IG++F ++ + L+++ ++ Q+WDTAGQER+R++ +Y R + A++VYDIT +SF
Sbjct: 43 IGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVG 102
Query: 183 KWIDDVRTERGSDVIIMLVGNKTD 254
+W+ ++R S+++IMLVGNKTD
Sbjct: 103 RWLKELREHADSNIVIMLVGNKTD 126
Score = 35.9 bits (79), Expect = 0.006
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +2
Query: 266 RQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRV 376
R VSTEE A E N+ FIETSA NV++ F+ V
Sbjct: 131 RAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTV 167
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 88.6 bits (210), Expect = 7e-19
Identities = 38/84 (45%), Positives = 58/84 (69%)
Frame = +3
Query: 3 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 182
IG+DF +T LE +TV+LQ+WDTAGQERFR++ SY R + ++VYD+T+ +SF+
Sbjct: 41 IGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVK 100
Query: 183 KWIDDVRTERGSDVIIMLVGNKTD 254
+W+ ++ V +LVGNK+D
Sbjct: 101 QWLQEIDRYAVEGVNRLLVGNKSD 124
Score = 33.9 bits (74), Expect = 0.022
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +2
Query: 233 VGRQQDRFSDKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLF 367
VG + D DK+ V + A LN+ F+ETSAK NV+Q F
Sbjct: 119 VGNKSDMV-DKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAF 162
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 87.8 bits (208), Expect = 1e-18
Identities = 38/85 (44%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 IGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 179
IG FL++T+ +++ T V+L++WDTAGQER++SL P Y R++ A+VVYDIT A S +
Sbjct: 47 IGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKA 106
Query: 180 SKWIDDVRTERGSDVIIMLVGNKTD 254
WI +++ + ++I L GNK D
Sbjct: 107 KSWIKELQRQAPEGIVIALAGNKLD 131
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 236 GRQQDRFSDKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 391
G + D ++R V + + A E N++F ETSAK NV +LF +A LP
Sbjct: 127 GNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP 178
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 87.0 bits (206), Expect = 2e-18
Identities = 37/88 (42%), Positives = 61/88 (69%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 IGIDFLSKTMYL----EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 170
+GIDF S+ + + + + ++LQ+WDTAGQE+FRS+ +Y R + AV+VYD+TN +SF
Sbjct: 42 VGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSF 101
Query: 171 HQTSKWIDDVRTERGSDVIIMLVGNKTD 254
+ S W+ D+R S + ++L G+K+D
Sbjct: 102 EELSSWLSDIRAMAPSTICVVLAGSKSD 129
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 81.4 bits (192), Expect = 1e-16
Identities = 34/84 (40%), Positives = 54/84 (64%)
Frame = +3
Query: 3 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 182
IGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y R + +++YD+T+ SF
Sbjct: 42 IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
Query: 183 KWIDDVRTERGSDVIIMLVGNKTD 254
W +V +V +L+GNK D
Sbjct: 102 TWFSNVEQHASENVYKILIGNKCD 125
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 260 DKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD-SAENK 415
D+RQVS E+G A EL V F+E SAK NV + F +A + AEN+
Sbjct: 128 DQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENE 180
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 76.2 bits (179), Expect = 4e-15
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 182
IG DFL+K + ++D+ V LQLWDTAGQERF+SL ++ R + V+VYD+ N+ SF
Sbjct: 41 IGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLD 100
Query: 183 KWIDDVRTERG----SDVIIMLVGNKTD 254
W D+ + +L+GNK D
Sbjct: 101 SWRDEFLIQASPSNPETFPFILLGNKVD 128
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 74.5 bits (175), Expect = 1e-14
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 182
IG DFL+K + ++D+ V LQLWDTAGQERF+SL ++ R + V+VY++ N+ SF
Sbjct: 41 IGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVE 100
Query: 183 KWIDDVRTERGSDVI---IMLVGNKTD 254
W + + D ++VGN+ D
Sbjct: 101 NWRQEFLYQTSQDECAFPFIIVGNQID 127
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 36 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTER 212
++ ++V+L LWDTAGQE + L P + + +V + I + +S S KWI+++ T
Sbjct: 51 VDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINT-L 109
Query: 213 GSDVIIMLVGNKTD 254
+V +LVG K D
Sbjct: 110 CPNVPFILVGMKAD 123
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 46.0 bits (104), Expect = 5e-06
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 36 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTER 212
++ R + L LWDTAGQE + L P DS V ++ + + S KWI +V
Sbjct: 49 VDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEV-LHF 107
Query: 213 GSDVIIMLVGNKTD 254
S++ I+LVG K D
Sbjct: 108 CSNLPILLVGCKVD 121
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 45.2 bits (102), Expect = 9e-06
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 191
D K ++ L + DTAGQE + ++ Y+R ++VY+IT+ +SF + S +
Sbjct: 43 DSYRKKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFY 102
Query: 192 DDVRTERGSDVI-IMLVGNKTD 254
+ + D ++LV NK D
Sbjct: 103 QQILRVKDKDTFPVVLVANKCD 124
Score = 39.9 bits (89), Expect = 3e-04
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +2
Query: 263 KRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSAENKPPEDMHEVI 442
+R VS EG++ AK ++ +++ETSAK NV++ F + + + +E K ++ V
Sbjct: 128 ERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEEKGFQNKQAVQ 187
Query: 443 LRQSPGDNKEQ 475
Q P ++
Sbjct: 188 TAQVPASTAKR 198
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 44.0 bits (99), Expect = 2e-05
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 36 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTER 212
++ R V L LWDTAGQE + L P DS V ++ + + + +S KWI +V
Sbjct: 49 VDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEV-LHF 107
Query: 213 GSDVIIMLVGNKTD 254
S + I+LV K D
Sbjct: 108 CSSLPILLVACKAD 121
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +3
Query: 63 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG 242
+WDTAGQE+ L Y ++++D+T+ ++ W D+ ++ I+L G
Sbjct: 62 VWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDL-VRVCENIPIVLCG 120
Query: 243 NKTD 254
NK D
Sbjct: 121 NKVD 124
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 30 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRT 206
++++ ++ L LWDTAGQE + L D+ V ++ + + + +S +KW+ +V +
Sbjct: 54 IFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEV-S 112
Query: 207 ERGSDVIIMLVGNKTD 254
V ++LV K D
Sbjct: 113 SNCPGVKLVLVALKCD 128
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 39.5 bits (88), Expect = 4e-04
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 45 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 221
+ + L LWDTAGQE + L P +S V ++ + I S + T KW +V+
Sbjct: 62 KVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQ-HFCPR 120
Query: 222 VIIMLVGNKTD 254
I+LVG K D
Sbjct: 121 TPIVLVGLKAD 131
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 188
D + T+ + D L L+DTAGQE + L P + V +V + +T+ SF KW
Sbjct: 38 DNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKW 97
Query: 189 IDDVRTERGSDVIIMLVGNKTD 254
+V V ++VG + D
Sbjct: 98 FPEVH-HHCPGVPCLIVGTQID 118
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 45 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 221
+ ++ +WD GQ++ R L Y + + V D ++N + + + + ++R D
Sbjct: 63 KNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRD 122
Query: 222 VIIMLVGNKTD 254
+++++ NK D
Sbjct: 123 CLLLVLANKQD 133
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 32.7 bits (71), Expect = 0.052
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 36 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-R 212
+E R + +WD GQ++ R L Y +++ + V D + + + + + E
Sbjct: 56 VEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDE 115
Query: 213 GSDVIIMLVGNKTD 254
D ++++ NK D
Sbjct: 116 LRDALLLVFANKQD 129
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 36 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT-ER 212
LE +R +WD GQ+ R+ +Y + + V D + + + ++ E+
Sbjct: 55 LEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEK 114
Query: 213 GSDVIIMLVGNKTD 254
I+++ NK+D
Sbjct: 115 LLFTSILVLANKSD 128
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -1
Query: 509 SVAASNKH-NCCPAPCCRRAIVSRSPRACLREVCFRQSPCQAGQQLLFG 366
S N H CPAP C AI +A L V C G+Q FG
Sbjct: 206 SFVDDNDHLRWCPAPDCEFAIECHVTQASLSSV-VPTVTCNCGKQFCFG 253
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = -2
Query: 160 ALVIS*TTTATVESLMYEGMRDRNRSWPAVSHSWSRTVRSSKYIVFDRKSIPI 2
+++I+ + T + G+ D + W ++++WS + K+I + SIP+
Sbjct: 7 SVIINPSVAHTATVIFLHGLGDSGQGWSFMANTWS-NFKHIKWIFPNAPSIPV 58
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 9 IDFLSKTMYLEDRTVRLQLWDTAGQE-RFRSLIPSYIRDSTVAVVVYDITN 158
I F + Y ED T + + +A + +F+SLI Y DST+A Y+ N
Sbjct: 27 ISFCTCKAYFEDNTSLSRRFFSAKKSLQFKSLIRKYSEDSTLAWRDYENYN 77
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 286 FLGRDLPLVRESVLLPTNMMMTSEPRSVRTSSIHFEVWWNEF 161
F GRD+ L+ + L + ++PRS R SSI V +F
Sbjct: 166 FRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVVCEDF 207
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 603 SRQSLRLYMYISSECSA*ACSHRRRPVSAGELGGGV 496
S Q L ++M ++ SA + SH R ++ G+ GGV
Sbjct: 464 SLQQLAVFMRHTAPVSALSFSHNGRYLATGDTSGGV 499
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 278 TEEGDKKAKELNVMFIETSAKAGYNVK 358
TEEGD K+ ELN +++ K+ K
Sbjct: 60 TEEGDSKSSELNDDYLDAHRKSSTKKK 86
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 269 QVSTEEGDKKAKELNVMFIETSAKAG-YNVKQLFRRVAAALPGMDSA 406
++ +E KKAKEL+ +F +TS G ++ + + LPG DS+
Sbjct: 99 EIFFDEALKKAKELDDVFQKTSKVVGPFHGIPISLKDQVDLPGKDSS 145
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +2
Query: 212 WF*RHHHVGRQQDRFSDKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 391
W+ R ++ +++ F DK Q ST E ++ IET Y L V + +
Sbjct: 383 WYLRLYNTMQEKKGFEDKEQGSTPAPSPSVIE-DISSIETDENHLYGAAVLLPIVLSTIR 441
Query: 392 GMDSAENK 415
+++ E+K
Sbjct: 442 HVNTRESK 449
>SPAC227.04 |||autophagy C terminal domain family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 588 VSFDGCISPVRWSTSKLSKSD 650
+ FD CI + W T L K+D
Sbjct: 24 IEFDECILKLEWHTELLDKND 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,632
Number of Sequences: 5004
Number of extensions: 55524
Number of successful extensions: 179
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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