Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0053
(695 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127647-1|ABL74413.1| 213|Anopheles gambiae Rab5 protein. 93 8e-21
AJ438610-3|CAD27475.1| 190|Anopheles gambiae putative RHO small... 52 2e-08
Z69980-1|CAA93820.1| 134|Anopheles gambiae GTP-binding protein ... 27 0.43
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 26 1.3
DQ182017-1|ABA56309.1| 383|Anopheles gambiae G(alpha)s protein. 25 2.3
AY045760-3|AAK84944.1| 168|Anopheles gambiae D7-related 2 prote... 25 2.3
AJ133853-1|CAB39728.1| 168|Anopheles gambiae D7-related 2 prote... 25 2.3
AJ000036-1|CAA03872.1| 150|Anopheles gambiae D7r2 protein protein. 25 2.3
AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcript... 24 5.3
AF387862-2|AAL56548.1| 942|Anopheles gambiae pol polyprotein pr... 23 7.0
>EF127647-1|ABL74413.1| 213|Anopheles gambiae Rab5 protein.
Length = 213
Score = 93.1 bits (221), Expect = 8e-21
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = +3
Query: 3 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 182
IG FL++T+ ++D TV+ ++WDTAGQER+ SL P Y R + A+VVYDI N++SF +
Sbjct: 57 IGAAFLTQTLCIDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNSDSFARAK 116
Query: 183 KWIDDVRTERGSDVIIMLVGNKTD 254
W+ +++ + +++I L GNK D
Sbjct: 117 TWVKELQRQASPNIVIALAGNKAD 140
Score = 37.5 bits (83), Expect = 4e-04
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 236 GRQQDRFSDKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSA 406
G + D ++ R V EE + A + ++F+ETSAK NV +F +A LP + A
Sbjct: 136 GNKAD-LANSRVVDYEEAKQYADDNRLLFMETSAKTAVNVNDIFLAIAKKLPKNEGA 191
>AJ438610-3|CAD27475.1| 190|Anopheles gambiae putative RHO small
GTPase protein.
Length = 190
Score = 51.6 bits (118), Expect = 2e-08
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKW 188
D S M ++ V L LWDTAGQE + L P + V ++ Y + + +SF TSKW
Sbjct: 41 DNYSAPMVVDGVQVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKW 100
Query: 189 IDDVRTERGSDVIIMLVGNKTD 254
+++ D I+LVG K D
Sbjct: 101 YPEIK-HHCPDAPIILVGTKID 121
>Z69980-1|CAA93820.1| 134|Anopheles gambiae GTP-binding protein
protein.
Length = 134
Score = 27.5 bits (58), Expect = 0.43
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 263 KRQVSTEEGDKKAKELN-VMFIETSAKAGYNVKQLF 367
++ ++ E+G+K AKEL V ++E SA +K +F
Sbjct: 77 QKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVF 112
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 25.8 bits (54), Expect = 1.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 406 RKQTSRRHARGDLETIARRQQGAGQQLCLLDAATELTSAHR 528
R+ S + G +ET+A R+Q Q++ L + + +AHR
Sbjct: 463 RELQSTGYEEGSMETLAGRRQALQQEVRGLRSELDRRNAHR 503
>DQ182017-1|ABA56309.1| 383|Anopheles gambiae G(alpha)s protein.
Length = 383
Score = 25.0 bits (52), Expect = 2.3
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 325 RDKRQSWLQC---*TVIPKSSCCPAWHGLCRKQTSRRHARGDLE 447
RD+R+ W+QC T I + C +++ + R+ ++ R L+
Sbjct: 217 RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD 260
>AY045760-3|AAK84944.1| 168|Anopheles gambiae D7-related 2 protein
protein.
Length = 168
Score = 25.0 bits (52), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 269 QVSTEEGDKKAKELNVMFIETSAKAGY 349
+ ST DKKA F+ TS+ AG+
Sbjct: 104 EASTSGSDKKANTFYTCFLGTSSLAGF 130
>AJ133853-1|CAB39728.1| 168|Anopheles gambiae D7-related 2 protein
protein.
Length = 168
Score = 25.0 bits (52), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 269 QVSTEEGDKKAKELNVMFIETSAKAGY 349
+ ST DKKA F+ TS+ AG+
Sbjct: 104 EASTSGSDKKANTFYTCFLGTSSLAGF 130
>AJ000036-1|CAA03872.1| 150|Anopheles gambiae D7r2 protein protein.
Length = 150
Score = 25.0 bits (52), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 269 QVSTEEGDKKAKELNVMFIETSAKAGY 349
+ ST DKKA F+ TS+ AG+
Sbjct: 104 EASTSGSDKKANTFYTCFLGTSSLAGF 130
>AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcriptase
protein.
Length = 988
Score = 23.8 bits (49), Expect = 5.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 182 EMDRRRSHGAWF*RHHHVGRQQDRFSDKRQVSTE 283
E+DR RSH R + R +++ ++RQ+ ++
Sbjct: 293 EIDRLRSHFYGMQRRFNRARTEEQREERRQIKSD 326
>AF387862-2|AAL56548.1| 942|Anopheles gambiae pol polyprotein
protein.
Length = 942
Score = 23.4 bits (48), Expect = 7.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 534 DGGCRLTLNTQTIYTYINVSFDGCISPVRWSTSKLSKSD 650
+GGCR T + T Y +I + + V++ S+ +D
Sbjct: 876 EGGCRRTKHIDTRYNFIRDLVNNNVIQVQYCPSERMIAD 914
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,389
Number of Sequences: 2352
Number of extensions: 14730
Number of successful extensions: 44
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -