Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0053
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.5  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.5  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 555 LNTQTIYTYINVSFDGCISPVRWSTS 632
           ++  TIY Y +V  DGC +P +W  S
Sbjct: 398 VDNTTIYKY-DVR-DGCRTPFQWDNS 421



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +3

Query: 156 NANSFHQTSKWIDDVRTERGSDV 224
           N N +     W+D V+ ++G+ +
Sbjct: 141 NTNKYKDYYIWVDPVKDDKGNPI 163


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 145 MISLTRTHSTRLRNGSTTFARSVVLTSSSC 234
           M  + RT+   +  G+T  ++  VLT++ C
Sbjct: 175 MAGIKRTYEPGMICGATIISKRYVLTAAHC 204


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 619 DGPQVNYRNPISKSVVSINLNT 684
           DGP+ +  + + KSV  +N+++
Sbjct: 229 DGPESHQNSNVPKSVAGLNVSS 250


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 389 PGMDSAENKPPEDMHEVILRQSPGDN 466
           P   + E K  E  HE +    PGDN
Sbjct: 282 PAALTTEVKSVEMHHEALTEALPGDN 307


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 339 LALVSMNITFSSLAFLSPSSVETCLLSENRSC 244
           L+ V ++ T +S   +     E C+L  NR+C
Sbjct: 14  LSKVMLDHTINSKKTIMRILKEVCVLQANRAC 45


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 126 TVAVVVYDITNANSFHQTSKWI 191
           +++  V+D+ N + FH  S +I
Sbjct: 168 SISGTVFDLINIHLFHDASNFI 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,941
Number of Sequences: 438
Number of extensions: 4248
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)