Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0052
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 132 2e-31
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 132 2e-31
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 109 2e-24
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 109 2e-24
02_02_0196 + 7685933-7685961,7686086-7686284 62 2e-10
03_04_0079 + 17102623-17102644,17102794-17102897,17104461-171046... 28 6.5
01_06_0368 + 28792168-28792372,28792654-28792853,28793218-287936... 28 6.5
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 8.7
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 132 bits (320), Expect = 2e-31
Identities = 63/94 (67%), Positives = 72/94 (76%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKK 512
G+DFYVVL R G+ VA RRR +VG HR+TK+
Sbjct: 126 GMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKE 159
Score = 109 bits (262), Expect = 2e-24
Identities = 55/80 (68%), Positives = 62/80 (77%)
Frame = +1
Query: 43 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 222
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 223 RNEKIAVHCTVEELKQKKSL 282
RNEKIA + TV K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +2
Query: 485 GISPPPHKEDAMKWFQQKYDG 547
GI KEDAMKWFQ KY+G
Sbjct: 151 GIQHRVTKEDAMKWFQVKYEG 171
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 132 bits (320), Expect = 2e-31
Identities = 63/94 (67%), Positives = 72/94 (76%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKK 512
G+DFYVVL R G+ VA RRR +VG HR+TK+
Sbjct: 126 GMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKE 159
Score = 109 bits (261), Expect = 2e-24
Identities = 55/80 (68%), Positives = 62/80 (77%)
Frame = +1
Query: 43 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 222
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 223 RNEKIAVHCTVEELKQKKSL 282
RNEKIA + TV K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +2
Query: 485 GISPPPHKEDAMKWFQQKYDG 547
GI KEDAMKWFQ KY+G
Sbjct: 151 GIQHRVTKEDAMKWFQVKYEG 171
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 109 bits (262), Expect = 2e-24
Identities = 55/80 (68%), Positives = 62/80 (77%)
Frame = +1
Query: 43 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 222
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 223 RNEKIAVHCTVEELKQKKSL 282
RNEKIA + TV K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 69.3 bits (162), Expect = 2e-12
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNF--SATGNFGFGIQEHIDLGIKYDPSIG 404
K C + RG KA ++LE GLK+ DN S T + + +YDPS G
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTG 122
Query: 405 IYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKK 512
IYG+DFYVVL R G+ VA RRR +VG HR+TK+
Sbjct: 123 IYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKE 158
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +2
Query: 485 GISPPPHKEDAMKWFQQKYDG 547
GI KEDAMKWFQ KY+G
Sbjct: 150 GIQHRVTKEDAMKWFQVKYEG 170
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 109 bits (261), Expect = 2e-24
Identities = 55/80 (68%), Positives = 62/80 (77%)
Frame = +1
Query: 43 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 222
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 29 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 88
Query: 223 RNEKIAVHCTVEELKQKKSL 282
RNEKIA + TV K + L
Sbjct: 89 RNEKIACYVTVRGEKAMQLL 108
Score = 74.1 bits (174), Expect = 8e-14
Identities = 36/52 (69%), Positives = 40/52 (76%)
Frame = +3
Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 386
K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 92 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +3
Query: 387 YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKK 512
YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TK+
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKE 52
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +2
Query: 485 GISPPPHKEDAMKWFQQKYDG 547
GI KEDAMKWFQ KY+G
Sbjct: 44 GIQHRVTKEDAMKWFQVKYEG 64
>03_04_0079 +
17102623-17102644,17102794-17102897,17104461-17104660,
17104864-17105005,17105024-17105290
Length = 244
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 157 APTPWRHESACHRIHQHICSS 95
APTP+ ++ A H + H+C++
Sbjct: 63 APTPYENDKALHFLRHHLCAT 83
>01_06_0368 +
28792168-28792372,28792654-28792853,28793218-28793675,
28793796-28793847
Length = 304
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 352 KPKLPVAEKLSRRNSYSLTFKPLSRISSALAPRLYNGQQS 233
K ++ V +KLS + S +++ K I AL P + NG++S
Sbjct: 120 KQRIEVLDKLSMKISEAISVKQNMLIEHALHPGMSNGKES 159
>12_02_0973 +
24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 304 SLTFKPLSRISSALAPRLYNGQQSFHYD 221
S+TF PLS P+L NG +++H D
Sbjct: 349 SVTFLPLSDHHFTGTPKLNNGNKAYHID 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,072,340
Number of Sequences: 37544
Number of extensions: 343428
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -