Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0052
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0) 155 3e-38
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_6002| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-26) 29 3.8
SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08) 28 6.7
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27) 27 8.8
SB_7224| Best HMM Match : TIL (HMM E-Value=8.2) 27 8.8
>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
Length = 260
Score = 155 bits (375), Expect = 3e-38
Identities = 69/85 (81%), Positives = 78/85 (91%)
Frame = +3
Query: 255 RGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 434
RG KAEEILE+GLKV+EYEL + FSATGNFGFGIQEHIDLGIKYDPSIGIYG+DF+VVL
Sbjct: 67 RGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFFVVL 126
Query: 435 GRPGFNVAHRRRKTGKVGFPHRLTK 509
GRPGFN++ R+ K G+VGFPHRLTK
Sbjct: 127 GRPGFNISKRKHKQGRVGFPHRLTK 151
Score = 125 bits (301), Expect = 3e-29
Identities = 61/74 (82%), Positives = 65/74 (87%)
Frame = +1
Query: 61 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI+
Sbjct: 2 NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIS 61
Query: 241 VHCTVEELKQKKSL 282
VHCTV K ++ L
Sbjct: 62 VHCTVRGPKAEEIL 75
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 506 KEDAMKWFQQK 538
K+DAMKWFQQK
Sbjct: 151 KDDAMKWFQQK 161
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 122 VTG*LVPPRCWSNSQDNSLYFP 187
VT LVPP W+ SQD +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 475 QEKWDFPTASQRRCYEVVPTEI*WYH 552
Q W+ PT +Q Y T+ WYH
Sbjct: 233 QANWNHPTKTQANWYHPTKTQANWYH 258
>SB_6002| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-26)
Length = 376
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 311 FIFSDFQTPLKDFFCFS-SSTVQWTAIFSLRR 219
F +F+ +K FC S +QWT IFS RR
Sbjct: 331 FTNKNFKLAVKRLFCGGVSKNMQWTGIFSSRR 362
>SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -2
Query: 389 VLDTQVNVFLNTEAKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSTVQ 246
V D QVN FLN E P+ + TP KD C S+T +
Sbjct: 21 VTDKQVNDFLNVCIDSKHHKEKPGPEVDYFHHCTPWKDHACCKSNTTK 68
>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
Length = 551
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 315 RRDNFSATGNFGFGIQEHIDLGIKYD 392
++ ++SATG+F ++EHI G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331
>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 121 GDRLTRAAKVLEQLTGQQPVFSKARY 198
G R TR A +QLT + VFSK Y
Sbjct: 66 GSRRTRTAFTHQQLTALEKVFSKTHY 91
>SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27)
Length = 770
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -3
Query: 358 IPKPKLPVAEKLSRRNSYSLTFKPLSRISSALAPRLYNGQQSFHYDGYQ 212
IPK KLP L R S P+SR P + QS +DGY+
Sbjct: 713 IPKAKLPPNNSLFRALDAS---GPVSRGPDRRMPDITRANQSARFDGYR 758
>SB_7224| Best HMM Match : TIL (HMM E-Value=8.2)
Length = 147
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/69 (26%), Positives = 25/69 (36%)
Frame = -3
Query: 469 RLLCATLKPGRXXXXXXXXXXXXIEGSYLIPKSMCS*IPKPKLPVAEKLSRRNSYSLTFK 290
R C T+KP IP C K K P+++ L YS+ F+
Sbjct: 77 RCYCLTVKPCGSKISADPRICPENVADRRIPPLECDIQAKIKTPISKTLLHVRLYSIVFR 136
Query: 289 PLSRISSAL 263
P S+L
Sbjct: 137 PTKTQKSSL 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,404,337
Number of Sequences: 59808
Number of extensions: 405396
Number of successful extensions: 1125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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