Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0052
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   137   7e-33
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   136   2e-32
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    32   0.27 
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    29   1.9  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    29   3.4  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    29   3.4  
AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormo...    27   7.8  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  137 bits (331), Expect = 7e-33
 Identities = 62/86 (72%), Positives = 73/86 (84%)
 Frame = +3

Query: 255 RGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 434
           RG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG+DFYVVL
Sbjct: 82  RGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVL 141

Query: 435 GRPGFNVAHRRRKTGKVGFPHRLTKK 512
            R G  +A RRR  G+VG  HR+ ++
Sbjct: 142 DRAGRRIAKRRRAPGRVGPSHRVERE 167



 Score =  132 bits (318), Expect = 2e-31
 Identities = 65/85 (76%), Positives = 71/85 (83%)
 Frame = +1

Query: 28  KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 207
           K  E  E  ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 6   KQTEIREKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65

Query: 208 SFGIRRNEKIAVHCTVEELKQKKSL 282
           +FGIRRNEKIAVHCTV   K ++ L
Sbjct: 66  TFGIRRNEKIAVHCTVRGPKAEEIL 90



 Score = 31.5 bits (68), Expect = 0.48
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 485 GISPPPHKEDAMKWFQQKYDG 547
           G S    +E+++KWFQQKYDG
Sbjct: 159 GPSHRVEREESIKWFQQKYDG 179


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  136 bits (328), Expect = 2e-32
 Identities = 61/86 (70%), Positives = 72/86 (83%)
 Frame = +3

Query: 255 RGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 434
           RG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+DFYVVL
Sbjct: 82  RGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVL 141

Query: 435 GRPGFNVAHRRRKTGKVGFPHRLTKK 512
            R G  V+ RRR  G++G  HR+ K+
Sbjct: 142 NRNGVRVSKRRRAPGRIGPSHRVDKE 167



 Score =  131 bits (317), Expect = 3e-31
 Identities = 65/85 (76%), Positives = 70/85 (82%)
 Frame = +1

Query: 28  KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 207
           K  E  E   +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 6   KQTEIREKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65

Query: 208 SFGIRRNEKIAVHCTVEELKQKKSL 282
           +FGIRRNEKIAVHCTV   K ++ L
Sbjct: 66  TFGIRRNEKIAVHCTVRGPKAEEIL 90



 Score = 32.3 bits (70), Expect = 0.27
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +2

Query: 476 RKSGISPPPH---KEDAMKWFQQKYDG 547
           R  G   P H   KE+ +KWFQQKYDG
Sbjct: 153 RAPGRIGPSHRVDKEETIKWFQQKYDG 179


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 390 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKKM 515
           DP  GI G+  + V G   F +A R+  +GK     RL KK+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKKL 201


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 255 RGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 407
           R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 355 REQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
            domain protein 1 protein.
          Length = 1346

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 166  GQQPVFSKARYTVRSFGIRRNEKIAVHCTVEELKQKKSLRGV*KSENMNCGVTTSPP-RV 342
            G  P F  A+  V+ F  ++ ++  V    E   Q  S+  + +S+ +N G+T  PP  V
Sbjct: 856  GAVPTFD-AKKIVQLFETKKEKEAPVKKVAETKTQTLSVLPLKRSQAINIGLTKLPPINV 914

Query: 343  ILASVFK 363
            I A++ K
Sbjct: 915  IPAAIMK 921


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin protein.
          Length = 1346

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 166  GQQPVFSKARYTVRSFGIRRNEKIAVHCTVEELKQKKSLRGV*KSENMNCGVTTSPP-RV 342
            G  P F  A+  V+ F  ++ ++  V    E   Q  S+  + +S+ +N G+T  PP  V
Sbjct: 856  GAVPTFD-AKKIVQLFETKKEKEAPVKKVAETKTQTLSVLPLKRSQAINIGLTKLPPINV 914

Query: 343  ILASVFK 363
            I A++ K
Sbjct: 915  IPAAIMK 921


>AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 125 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 237 CCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNF 347
           C   + +  + ++  E G+   +++  RD+F ATG F
Sbjct: 55  CSRNFCKRCRLKKCREMGMDTTKFQYNRDSFRATGQF 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,687,472
Number of Sequences: 27780
Number of extensions: 300084
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)