Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0051
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 155 7e-39
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 92 8e-20
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 85 7e-18
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 85 9e-18
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 85 1e-17
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 77 2e-15
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 72 7e-14
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 70 3e-13
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 50 4e-07
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 48 2e-06
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 47 2e-06
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 46 7e-06
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 42 6e-05
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 42 6e-05
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 41 1e-04
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 41 2e-04
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 38 0.002
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 34 0.017
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 31 0.16
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 30 0.27
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 27 1.9
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 26 4.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 4.4
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 5.9
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 26 5.9
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 155 bits (375), Expect = 7e-39
Identities = 72/85 (84%), Positives = 78/85 (91%)
Frame = +1
Query: 1 GIDXLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 180
GID LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA++VYDITN NSF T K
Sbjct: 45 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEK 104
Query: 181 WIDDVRTERGSDVIIMLVGNKTDLS 255
WI+DVR ERG DVII+LVGNKTDL+
Sbjct: 105 WIEDVRAERGDDVIIVLVGNKTDLA 129
Score = 82.2 bits (194), Expect = 6e-17
Identities = 45/87 (51%), Positives = 63/87 (72%)
Frame = +3
Query: 228 VGRQQDRSLDKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSAEN 407
VG + D + DKRQV+ EEG+KKAKEL +M +ETSAKAG+NVK LFR++A LPGM++ E
Sbjct: 122 VGNKTDLA-DKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVET 180
Query: 408 KPPEDMHEVILRQSPGDNKEQDSSCVC 488
+ + M +V ++ P +N +SSC C
Sbjct: 181 QSTQ-MIDVSIQ--PNEN---ESSCNC 201
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 91.9 bits (218), Expect = 8e-20
Identities = 35/84 (41%), Positives = 61/84 (72%)
Frame = +1
Query: 1 GIDXLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 180
G++ ++ + L+++ ++ Q+WDTAGQER+R++ +Y R + A++VYDIT +SF +
Sbjct: 44 GVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGR 103
Query: 181 WIDDVRTERGSDVIIMLVGNKTDL 252
W+ ++R S+++IMLVGNKTDL
Sbjct: 104 WLKELREHADSNIVIMLVGNKTDL 127
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/48 (47%), Positives = 28/48 (58%)
Frame = +3
Query: 228 VGRQQDRSLDKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRV 371
VG + D L R VSTEE A E N+ FIETSA NV++ F+ V
Sbjct: 121 VGNKTDL-LHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTV 167
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 85.4 bits (202), Expect = 7e-18
Identities = 37/86 (43%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GIDXLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 177
G L++T+ +++ T V+L++WDTAGQER++SL P Y R++ A+VVYDIT A S +
Sbjct: 48 GAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK 107
Query: 178 KWIDDVRTERGSDVIIMLVGNKTDLS 255
WI +++ + ++I L GNK DL+
Sbjct: 108 SWIKELQRQAPEGIVIALAGNKLDLA 133
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 231 GRQQDRSLDKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 386
G + D + ++R V + + A E N++F ETSAK NV +LF +A LP
Sbjct: 127 GNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP 178
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 85.0 bits (201), Expect = 9e-18
Identities = 36/84 (42%), Positives = 57/84 (67%)
Frame = +1
Query: 1 GIDXLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 180
G+D +T LE +TV+LQ+WDTAGQERFR++ SY R + ++VYD+T+ +SF+ +
Sbjct: 42 GVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQ 101
Query: 181 WIDDVRTERGSDVIIMLVGNKTDL 252
W+ ++ V +LVGNK+D+
Sbjct: 102 WLQEIDRYAVEGVNRLLVGNKSDM 125
Score = 35.9 bits (79), Expect = 0.005
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = +3
Query: 228 VGRQQDRSLDKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSAEN 407
VG + D +DK+ V + A LN+ F+ETSAK NV+Q F ++ + N
Sbjct: 119 VGNKSDM-VDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKER-MGNN 176
Query: 408 KPPEDMHEVILRQSPGDNKEQDSSCVC 488
+ ++ G N Q SS C
Sbjct: 177 TFASSNAKSSVKVGQGTNVSQSSSNCC 203
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 84.6 bits (200), Expect = 1e-17
Identities = 37/88 (42%), Positives = 60/88 (68%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 GIDXLSKTMYL----EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 168
GID S+ + + + + ++LQ+WDTAGQE+FRS+ +Y R + AV+VYD+TN +SF
Sbjct: 43 GIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFE 102
Query: 169 QTSKWIDDVRTERGSDVIIMLVGNKTDL 252
+ S W+ D+R S + ++L G+K+DL
Sbjct: 103 ELSSWLSDIRAMAPSTICVVLAGSKSDL 130
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 77.0 bits (181), Expect = 2e-15
Identities = 32/83 (38%), Positives = 52/83 (62%)
Frame = +1
Query: 1 GIDXLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 180
GID +T+ L+ + ++LQ+WDTAGQERFR++ +Y R + +++YD+T+ SF
Sbjct: 43 GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRT 102
Query: 181 WIDDVRTERGSDVIIMLVGNKTD 249
W +V +V +L+GNK D
Sbjct: 103 WFSNVEQHASENVYKILIGNKCD 125
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 255 DKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD-SAENK 410
D+RQVS E+G A EL V F+E SAK NV + F +A + AEN+
Sbjct: 128 DQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENE 180
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 72.1 bits (169), Expect = 7e-14
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 GIDXLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 180
G D L+K + ++D+ V LQLWDTAGQERF+SL ++ R + V+VYD+ N+ SF
Sbjct: 42 GADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDS 101
Query: 181 WIDDVRTERG----SDVIIMLVGNKTDL 252
W D+ + +L+GNK D+
Sbjct: 102 WRDEFLIQASPSNPETFPFILLGNKVDV 129
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 70.1 bits (164), Expect = 3e-13
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Frame = +1
Query: 1 GIDXLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 180
G D L+K + ++D+ V LQLWDTAGQERF+SL ++ R + V+VY++ N+ SF
Sbjct: 42 GADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVEN 101
Query: 181 WIDDVRTERGSDVI---IMLVGNKTD 249
W + + D ++VGN+ D
Sbjct: 102 WRQEFLYQTSQDECAFPFIIVGNQID 127
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 49.6 bits (113), Expect = 4e-07
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 31 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTER 207
++ ++V+L LWDTAGQE + L P + + +V + I + +S S KWI+++ T
Sbjct: 51 VDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINT-L 109
Query: 208 GSDVIIMLVGNKTDL 252
+V +LVG K DL
Sbjct: 110 CPNVPFILVGMKADL 124
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 31 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTER 207
++ R + L LWDTAGQE + L P DS V ++ + + S KWI +V
Sbjct: 49 VDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEV-LHF 107
Query: 208 GSDVIIMLVGNKTDL 252
S++ I+LVG K DL
Sbjct: 108 CSNLPILLVGCKVDL 122
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 47.2 bits (107), Expect = 2e-06
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 7 DXLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 186
D K ++ L + DTAGQE + ++ Y+R ++VY+IT+ +SF + S +
Sbjct: 43 DSYRKKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFY 102
Query: 187 DDVRTERGSDVI-IMLVGNKTDL 252
+ + D ++LV NK DL
Sbjct: 103 QQILRVKDKDTFPVVLVANKCDL 125
Score = 41.1 bits (92), Expect = 1e-04
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = +3
Query: 258 KRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSAENKPPEDMHEVI 437
+R VS EG++ AK ++ +++ETSAK NV++ F + + + +E K ++ V
Sbjct: 128 ERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEEKGFQNKQAVQ 187
Query: 438 LRQSPGDNKEQDSS 479
Q P ++ S+
Sbjct: 188 TAQVPASTAKRASA 201
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 45.6 bits (103), Expect = 7e-06
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 31 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTER 207
++ R V L LWDTAGQE + L P DS V ++ + + + +S KWI +V
Sbjct: 49 VDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEV-LHF 107
Query: 208 GSDVIIMLVGNKTDL 252
S + I+LV K DL
Sbjct: 108 CSSLPILLVACKADL 122
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 42.3 bits (95), Expect = 6e-05
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 58 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG 237
+WDTAGQE+ L Y ++++D+T+ ++ W D+ ++ I+L G
Sbjct: 62 VWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDL-VRVCENIPIVLCG 120
Query: 238 NKTDL 252
NK D+
Sbjct: 121 NKVDV 125
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 42.3 bits (95), Expect = 6e-05
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 25 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRT 201
++++ ++ L LWDTAGQE + L D+ V ++ + + + +S +KW+ +V +
Sbjct: 54 IFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEV-S 112
Query: 202 ERGSDVIIMLVGNKTDL 252
V ++LV K DL
Sbjct: 113 SNCPGVKLVLVALKCDL 129
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 41.1 bits (92), Expect = 1e-04
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 40 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 216
+ + L LWDTAGQE + L P +S V ++ + I S + T KW +V+
Sbjct: 62 KVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQ-HFCPR 120
Query: 217 VIIMLVGNKTDL 252
I+LVG K DL
Sbjct: 121 TPIVLVGLKADL 132
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 7 DXLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 183
D + T+ + D L L+DTAGQE + L P + V +V + +T+ SF KW
Sbjct: 38 DNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKW 97
Query: 184 IDDVRTERGSDVIIMLVGNKTDL 252
+V V ++VG + DL
Sbjct: 98 FPEVH-HHCPGVPCLIVGTQIDL 119
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 40 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 216
+ ++ +WD GQ++ R L Y + + V D ++N + + + + ++R D
Sbjct: 63 KNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRD 122
Query: 217 VIIMLVGNKTDL 252
+++++ NK DL
Sbjct: 123 CLLLVLANKQDL 134
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 34.3 bits (75), Expect = 0.017
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 31 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-R 207
+E R + +WD GQ++ R L Y +++ + V D + + + + + E
Sbjct: 56 VEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDE 115
Query: 208 GSDVIIMLVGNKTDL 252
D ++++ NK DL
Sbjct: 116 LRDALLLVFANKQDL 130
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 31.1 bits (67), Expect = 0.16
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3
Query: 656 RSWISDFNNLLVDHRQVKY 600
+SW+S F+NLL +H Q+KY
Sbjct: 399 KSWLSHFSNLLFNHGQLKY 417
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 30.3 bits (65), Expect = 0.27
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 31 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT-ER 207
LE +R +WD GQ+ R+ +Y + + V D + + + ++ E+
Sbjct: 55 LEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEK 114
Query: 208 GSDVIIMLVGNKTDLS 255
I+++ NK+D+S
Sbjct: 115 LLFTSILVLANKSDVS 130
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -2
Query: 504 SVAASNKH-NCCPAPCCRRAIVSRSPRACLREVCFRQSPCQAGQQLLFG 361
S N H CPAP C AI +A L V C G+Q FG
Sbjct: 206 SFVDDNDHLRWCPAPDCEFAIECHVTQASLSSV-VPTVTCNCGKQFCFG 253
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 281 FLGRDLPLVERSVLLPTNMMMTSEPRSVRTSSIHFEVWWNEF 156
F GRD+ L+ + L + ++PRS R SSI V +F
Sbjct: 166 FRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVVCEDF 207
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 495 PPPKLPALHRPATVAAGSR*TLRRYIH 575
PPP LPA P+ G R L + IH
Sbjct: 1731 PPPPLPASSAPSVPNPGDRSALLQQIH 1757
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 273 TEEGDKKAKELNVMFIETSAKAGYNVK 353
TEEGD K+ ELN +++ K+ K
Sbjct: 60 TEEGDSKSSELNDDYLDAHRKSSTKKK 86
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 264 QVSTEEGDKKAKELNVMFIETSAKAG-YNVKQLFRRVAAALPGMDSA 401
++ +E KKAKEL+ +F +TS G ++ + + LPG DS+
Sbjct: 99 EIFFDEALKKAKELDDVFQKTSKVVGPFHGIPISLKDQVDLPGKDSS 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,344
Number of Sequences: 5004
Number of extensions: 55944
Number of successful extensions: 213
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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