Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0051
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 405 NKPPEDMHEVILRQSPGDNKEQDSSCVC*TPPPKL 509
           N+    M++ I+R+S GD  +  +       PP L
Sbjct: 390 NREDRGMYQCIVRRSEGDTAQASAELQLGNAPPML 424


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 405 NKPPEDMHEVILRQSPGDNKEQDSSCVC*TPPPKL 509
           N+    M++ I+R+S GD  +  +       PP L
Sbjct: 390 NREDRGMYQCIVRRSEGDTAQASAELQLGNAPPML 424


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 494 AATEATSASPAGDGGCRLT 550
           AA  A  A+ AGD  CR T
Sbjct: 133 AAAAAVDAATAGDKSCRYT 151


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 140 MISLTRTHSTRLRNGSTTFARSVVLTSSSC 229
           M  + RT+   +  G+T  ++  VLT++ C
Sbjct: 175 MAGIKRTYEPGMICGATIISKRYVLTAAHC 204


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 478 VVFVRRRHRSYQRFTGRRRWLQ 543
           +VFV    R  +   GRRRW Q
Sbjct: 27  MVFVVGLERVAEELMGRRRWKQ 48


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 215 TSSSCWSATRPISRQ 259
           T+  CW+  RP+ R+
Sbjct: 322 TALGCWNENRPLKRR 336


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +1

Query: 151 NANSFHQTSKWIDDVRTERGSDV 219
           N N +     W+D V+ ++G+ +
Sbjct: 141 NTNKYKDYYIWVDPVKDDKGNPI 163


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 384 PGMDSAENKPPEDMHEVILRQSPGDN 461
           P   + E K  E  HE +    PGDN
Sbjct: 282 PAALTTEVKSVEMHHEALTEALPGDN 307


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 121 TVAVVVYDITNANSFHQTSKWI 186
           +++  V+D+ N + FH  S +I
Sbjct: 168 SISGTVFDLINIHLFHDASNFI 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,969
Number of Sequences: 438
Number of extensions: 4162
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)