Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0050
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    28   1.1  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   4.5  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   5.9  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   5.9  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   7.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   7.8  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    25   7.8  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 16  DSSSEEISPTKESITADESRGHFYNFGSHYEGLTLPKKK 132
           DSSSEE S  +ES ++ ES        S    + +PKKK
Sbjct: 35  DSSSEEESSEEESASSSESESSEEESESEESEVEVPKKK 73


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = -2

Query: 226 HQIYQIDHRYFHRFQLNLKHPNPLVQTVDFCFSFWVR*GLH-------NENQNYKSVLDF 68
           ++I+   H Y   F   L H    + ++  CF+F+ R  +H       NE  +  S   F
Sbjct: 383 YEIFYTGHLYA-LFAFKLSHDEAFISSILACFTFFSRDKVHVEPIEDCNEAYSLSSKFHF 441

Query: 67  RLQLLI 50
           + ++LI
Sbjct: 442 KKEILI 447


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 7   ESLDSSSEEISPTKESITADESRGHFYNFGS 99
           ES+D+ S  +     S+T +E + HF + GS
Sbjct: 50  ESIDAQSVYVGNVDYSVTPEELQSHFASCGS 80


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 1   RHESLDSSSEEISPTKESITADESRGHFYNFGSHYEGLTLPKKKNRNPQFALEDLDVLDL 180
           RH S   S  + SP+ +S    +SRG    + S  EG   P + ++ P   ++ LDV  L
Sbjct: 116 RHRS--PSHNDSSPSTQSSL--KSRGSIRRYKSVREGSHRPGRSSKEPLDQIDRLDVTGL 171


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 288 YDEMFDVI-SLDALTRKSDTGNKN-IKKDRRRQNKMMRDLWPEDEVFRT 428
           YDE+FDV+ S+     ++D  N + I  +R R++  +R+  P   + RT
Sbjct: 601 YDELFDVLSSISIQDCETDRANDDTILNNRVRRSGTIREEAPHRSLSRT 649


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 282  DEYDEMFDVISL-DALTRKSDTGNKNIKKDRRRQNKMMRDLWPEDE 416
            D     F V  L DAL RK D  ++N+K D    +  +  LW  DE
Sbjct: 2055 DNLQNAFSVAMLSDALYRKFDLADENLKHDIDFLSSKI--LWQRDE 2098


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 64  DESRGHF-YNFGSHYEGLTLPKKKNRNPQFALEDLDVLDLTEIGEN 198
           ++   HF  +  S++E  +  K+  ++PQF    LD+L L E+  +
Sbjct: 460 EDPNSHFNVSNSSNHEEASPKKEVLKSPQFQRRSLDILRLGELSSD 505


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 226 HQIYQIDHRYFHRFQLNLKHPNPLVQTVDFC 134
           H + + +HRYF ++        PL  +  FC
Sbjct: 197 HNLSKFNHRYFTKYPTVFLSAGPLFLSYQFC 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,615
Number of Sequences: 5004
Number of extensions: 49404
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)