Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0050
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320...    28   6.2  
09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851...    28   6.2  
03_05_0240 - 22263189-22263815                                         28   8.1  
02_05_0875 + 32393496-32393881,32395297-32395397,32395493-323956...    28   8.1  

>12_01_0404 +
           3200787-3200898,3201016-3201091,3201442-3201544,
           3202109-3202160,3202239-3202333,3202703-3202768,
           3202910-3203419,3203598-3203756,3204022-3204321,
           3204867-3205193,3205548-3205754,3205978-3206076,
           3206193-3206251,3206294-3206639
          Length = 836

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 261 HRDGRDGDEYDEMFDVISLDALTRKSDTGNKNIKKDRRRQNKMMRDLWPE 410
           + D  DG+  ++ F     D L  ++D  N  IKK +++ NK+M D  PE
Sbjct: 104 YSDSEDGNAVNDCF---VQDGLDGENDKMNTEIKKQKKKLNKLM-DKDPE 149


>09_04_0701 +
           19583386-19583554,19584290-19584441,19585123-19585181,
           19585319-19585344,19585407-19585758,19586184-19586667
          Length = 413

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 4   HESLDSSSEEISPTKESITADESRGHFYNFGSHYEGLTLPKKKNRNPQ 147
           H      +  ++  +    A E+RGH +   SH    T+P     NPQ
Sbjct: 252 HRPTARRASNLAHLRSLTAASETRGHGHGMTSHAVQQTIPSSMASNPQ 299


>03_05_0240 - 22263189-22263815
          Length = 208

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 258 KHRDGRDGDEYDEMFDVISLDALTRKSDTGNKNIKKDRRRQNKMMRDLWPED 413
           +HRD  DG+   EM D    D +          ++ D RR    +RDL  E+
Sbjct: 124 RHRDVEDGEVEQEMSD----DGMDVNQSDNENTVELDERRLILFIRDLLDEE 171


>02_05_0875 +
           32393496-32393881,32395297-32395397,32395493-32395674,
           32396135-32396233,32396311-32396403
          Length = 286

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = +1

Query: 19  SSSEEISPTKESITADESRGHFYNFGSHY----EGLTLPKKKNRNPQFALEDLDVLDLTE 186
           ++ E  +P K+       R + YN   +Y    +    P   N + + A  D D +D+ E
Sbjct: 108 ATDESFTPIKQDTKKGNLRYYPYNINWNYGLFPQTWEDPTLANTDVEGAFGDNDPVDVVE 167

Query: 187 IGE---NIGD 207
           IGE   NIGD
Sbjct: 168 IGERRANIGD 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,966
Number of Sequences: 37544
Number of extensions: 261508
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)