Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0050
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   6.3  
SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 306  HQTFHHTHRRLYRHDVCWLKFILPLSATKYTK 211
            H   HHTH R ++  +C   F +    TK+ K
Sbjct: 988  HVRVHHTHERPFQCQICHKSFHMAGDLTKHAK 1019


>SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 64  DESRGHFYNFGSHYEGLTLPKKKNR 138
           + +R  +YN+  HYE  T  K+KNR
Sbjct: 256 ESTRRKWYNYTLHYEPNTTSKRKNR 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,612,118
Number of Sequences: 59808
Number of extensions: 322286
Number of successful extensions: 1057
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)