Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0050
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z73427-6|CAA97798.2|  410|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
            protein F33H12.6 protein.
          Length = 1360

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 142  PQFALEDLDVL--DLTEIGENIGDQFGIFGGRKRQ 240
            P+ AL+ +DVL  DLT+I +  G +  I GG  RQ
Sbjct: 1030 PKTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQ 1064


>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
            protein ZK250.9 protein.
          Length = 1466

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 142  PQFALEDLDVL--DLTEIGENIGDQFGIFGGRKRQ 240
            P+ AL+ +DVL  DLT+I +  G +  I GG  RQ
Sbjct: 1136 PKTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQ 1170


>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
            protein Y16E11A.2 protein.
          Length = 1466

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 142  PQFALEDLDVL--DLTEIGENIGDQFGIFGGRKRQ 240
            P+ AL+ +DVL  DLT+I +  G +  I GG  RQ
Sbjct: 1136 PKTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQ 1170


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
            protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 142  PQFALEDLDVL--DLTEIGENIGDQFGIFGGRKRQ 240
            P+ AL+ +DVL  DLT+I +  G +  I GG  RQ
Sbjct: 1035 PKTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQ 1069


>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
            protein F59H6.5 protein.
          Length = 1486

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 142  PQFALEDLDVL--DLTEIGENIGDQFGIFGGRKRQ 240
            P+ AL+ +DVL  DLT+I +  G +  I GG  RQ
Sbjct: 1156 PKTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQ 1190


>Z73427-6|CAA97798.2|  410|Caenorhabditis elegans Hypothetical
           protein F58B3.6 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 264 RDGRDGDEYDEMFDVISL-DALTRKSDTGNKNIKKDRRRQNKMMRDL 401
           +D R G  +     V+SL D +   +D+  K  KKD+R Q   +RD+
Sbjct: 264 QDARPGFRFPNKEHVLSLLDQMV--NDSSKKKTKKDKRAQRYAVRDI 308


>Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.12 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 429 SLSNRCNY*FISFITALNLK*MFLAV**ILSDFIYYACMRIKICLHFLNYF 581
           ++S  C   + SFI  L ++ +   V  I  +F+YY C+  K  L F+ +F
Sbjct: 227 NMSIACQEQYRSFILGLTIQCILPCVIFIPLEFLYYYCIITKNELLFVEFF 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,617
Number of Sequences: 27780
Number of extensions: 264580
Number of successful extensions: 655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)