Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0050
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    29   0.056
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.91 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.4  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 97  SHYEGLTLPKKKNRNPQ 147
           S +EG + PKK+N+NPQ
Sbjct: 17  SEFEGASSPKKRNKNPQ 33


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 255 NKHRDGRDGDEYDEMFDVISLDALTRKSDTGNKNIKKDRRRQNKMMRDLWPEDE 416
           NK++DG D ++Y++             +D GN++ + DRR++    R+   E+E
Sbjct: 105 NKNKDGDDNNDYED-------------NDYGNQDNRNDRRKKTFAAREDNDEEE 145


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 97  SHYEGLTLPKKKNR 138
           + Y GLT PKK N+
Sbjct: 424 TEYNGLTEPKKDNK 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,181
Number of Sequences: 438
Number of extensions: 3004
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)