Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0050
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02940.1 68417.m00401 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   3.9  
At1g09020.1 68414.m01006 protein kinase, putative similar to pro...    29   3.9  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    28   6.8  
At3g45830.1 68416.m04960 expressed protein                             28   6.8  
At1g59850.1 68414.m06741 expressed protein                             27   9.0  
At1g06120.1 68414.m00641 fatty acid desaturase family protein si...    27   9.0  
At1g06090.1 68414.m00638 fatty acid desaturase family protein si...    27   9.0  

>At4g02940.1 68417.m00401 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to A. thaliana hypothetical
           protein T13L16.2, GenBank accession number 2708738;
           contains Pfam domain PF03171 2OG-Fe(II) oxygenase
           superfamily
          Length = 569

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +1

Query: 4   HESLDSSSEEISPTKESITADESRGHFYNFGSHYEGLTLPKKKNRNPQFA-LEDLDVLDL 180
           HE  D+ S EI P K     ++ +GH  N     +GL L ++  +  + + L D  V +L
Sbjct: 209 HEDCDARSCEIKPIKGFQAKEQVKGHTVNV---VKGLKLYEELLKEDEISKLLDF-VAEL 264

Query: 181 TEIGEN---IGDQFGIFGGRKRQNK 246
            E G N    G+ F +F  + + NK
Sbjct: 265 REAGINGKLAGESFILFNKQIKGNK 289


>At1g09020.1 68414.m01006 protein kinase, putative similar to
           protein kinase AKINbetagamma-2 [Zea mays] GI:11139548,
           AKINbetagamma-1 [Zea mays] GI:11139546; contains Pfam
           profile PF00571: CBS domain
          Length = 487

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 112 LTLPKKKNRNPQFALEDLDVLDLTEIGENIGDQFGIFGGRKRQNKLKPTNIVTV 273
           +T   K     Q  L+D+ V    ++G++    +GIF G++    L+  ++V V
Sbjct: 396 ITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKV 449


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +1

Query: 25  SEEISPTKESITADESRGHFYNFGSHYEGLTLPK--KKNRNP--QFALEDLDVLDLTEIG 192
           +EE+ P K++ + D+      + G  Y+G+ L +  KKN  P  +  +ED D + + E  
Sbjct: 270 TEEVRPMKKAKSEDQKNSKTGDVGGVYDGVKLEEETKKNGYPTSKANVEDEDSIKIVETD 329

Query: 193 ENI 201
            ++
Sbjct: 330 SSL 332


>At3g45830.1 68416.m04960 expressed protein
          Length = 1298

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 267 DGRDGDEYDEMFDVISLDALTRKSDTGNKNIKKDRRRQNKMMRDLWPE 410
           DG  GDE  E    +S +AL++K  T    +  +RR  N  ++ L+P+
Sbjct: 710 DGNSGDENLEARLFVSCNALSKKRKTRESLMDMERREDNGDLQ-LYPD 756


>At1g59850.1 68414.m06741 expressed protein
          Length = 498

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 300 FDVISLDALTRKSDTGNKNIKKDRRRQN 383
           F VIS D L  +S T N N K++  RQN
Sbjct: 471 FSVISTDLLVSRSITQNGNHKRNACRQN 498


>At1g06120.1 68414.m00641 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase GB:BAA25180
           GI:2970034 (ADS1) from [Arabidopsis thaliana]; supported
           by cDNA:gi_12083275_gb_AF332434.1_AF332434
          Length = 299

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 244 YSASFCHQIYQID----HRYFHRFQLNLKHPNPLVQTVDFCFSFWV 119
           YSA F  Q + ID    HR+ H+F  + + P+  ++   F   FW+
Sbjct: 97  YSALFALQGHPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVFWI 142


>At1g06090.1 68414.m00638 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase GB:BAA25180
           GI:2970034 (ADS1) from [Arabidopsis thaliana]
          Length = 299

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 244 YSASFCHQIYQID----HRYFHRFQLNLKHPNPLVQTVDFCFSFWV 119
           YSA F  Q + ID    HR+ H+F  + + P+  ++   F   FW+
Sbjct: 97  YSALFALQGHPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVFWI 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,713,896
Number of Sequences: 28952
Number of extensions: 237688
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)