Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0049
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    52   1e-07
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    29   0.48 
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   3.4  

>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
 Frame = +1

Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYS- 432
           GYAY+P  + +S++  ++  +LK+ L      L  +++D+RL+ +L  L + +   + S 
Sbjct: 209 GYAYVPFSEQVSLVVEEFEENLKKALESTAKSLPRLDEDDRLLPILNHLSKGFVAPESSI 268

Query: 433 --ETKAVIPIESLDSISTKSFPLCMRQLMNN*ELPIT*NMGAGYSMGLFLKGIGVTLEDS 606
                  I    +DS     FPLC + L    +             GLFLK IG++++++
Sbjct: 269 VAPKSGAITAGQVDSF-VSHFPLCAKHLHEVLKRDKHLRHFGRLQYGLFLKDIGLSVDEA 327

Query: 607 *GFGGKNSLRLWIWDKFEK 663
             F  K+   +   DKF K
Sbjct: 328 LVFWRKSFTNV-TEDKFNK 345



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 26/82 (31%), Positives = 46/82 (56%)
 Frame = +2

Query: 8   RFIARELELFKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIESTPYSKIDNM 187
           RF+  E  LF+ RF        + F    +  + ++S++EK +V    ++++    I+N 
Sbjct: 127 RFLRAESTLFRFRFVNEETRERQAFIDSLDFQWESVSQEEK-DVFYEKLQASSQRNIENE 185

Query: 188 KFYKVKFFEVLDLVKARKVFLN 253
            F+KV FF+V DLV+ R VF++
Sbjct: 186 SFFKVPFFKVPDLVERRAVFVH 207



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +3

Query: 510 HEQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEFIKIMD 644
           HE L+   HL+H GRLQYGL LK         L FWR+ F  + +
Sbjct: 296 HEVLKRDKHLRHFGRLQYGLFLKDIGLSVDEALVFWRKSFTNVTE 340


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 228 LKQEKYFLMWIRLYTSQRFHISSCSTVSNTFKTKF 332
           L+  K F  W+RLY  +RF +   S   N+F + F
Sbjct: 267 LQYRKEFQRWLRLYEFRRFGLIGLSNFVNSFSSFF 301


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 122 DEKNEVIQNLIESTPYSKIDNMKFYK-VKFFEVLDLVKARKVFL 250
           DEKNE+  +L ES  YS +    ++  V++F +  L   RKV L
Sbjct: 78  DEKNELKHSLEESIDYSIVSASLWHMLVEWFGLEGLAIERKVLL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,422
Number of Sequences: 5004
Number of extensions: 59626
Number of successful extensions: 188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)