Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0049
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0021 - 12521013-12521116,12521476-12521533,12522418-125225...    49   4e-06
05_03_0525 + 15002846-15003048,15004814-15004937,15005458-150054...    30   2.0  
04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876...    29   4.6  
02_05_0470 + 29303558-29303681,29303797-29303847,29304811-29305019     29   4.6  

>07_03_0021 -
           12521013-12521116,12521476-12521533,12522418-12522525,
           12522609-12522702,12522875-12523035,12523095-12523169,
           12523431-12523490,12523589-12523648,12523935-12523982,
           12524065-12524113,12524368-12524432,12524522-12524605,
           12524710-12524729,12524777-12524801,12524993-12525052,
           12525130-12525211,12525344-12525447,12525662-12525723,
           12525840-12525996
          Length = 491

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 480 QVISSVYEAT-HEQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEF 629
           + +S+ Y    + QLR  HHLKHGGR+Q+GL LK         L FWR EF
Sbjct: 239 EALSNAYFGPDYSQLRENHHLKHGGRMQFGLFLKGAGLKLEDALAFWRAEF 289



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +2

Query: 11  FIARELELFKMRFAVMRGERLEVFFKLNNLCYTTI--SEDEKNEVIQNLIESTPYSKIDN 184
           F++ E  LF+ RF +   E   +      L Y  +  SE E N      +ES        
Sbjct: 115 FLSMETTLFRYRFRLESPESQRMLMSEFRLPYKALPHSEFEHNGASLLAVESV------- 167

Query: 185 MKFYKVKFFEVLDLVKARKVFLN 253
             F+KV F EV DLV +R+VFL+
Sbjct: 168 --FFKVPFEEVPDLVASRRVFLS 188



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = +1

Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLA----KACHHLCEIEQDERLVCLLKGLHQSYSGN 423
           GYAY+     +S++  Q+R ++ + L     K    + E E+D RL  +++ L  +Y G 
Sbjct: 190 GYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQEKD-RLTPIVEALSNAYFGP 248

Query: 424 DYSETK 441
           DYS+ +
Sbjct: 249 DYSQLR 254


>05_03_0525 +
           15002846-15003048,15004814-15004937,15005458-15005481,
           15005995-15006779,15006839-15006873,15007108-15007601,
           15007951-15008452,15008725-15008867,15009523-15009576,
           15010255-15010362,15010529-15010705,15011169-15011186,
           15011561-15011938,15012125-15012310,15012356-15013205,
           15013362-15013402,15013491-15013868,15014195-15014236,
           15014528-15014678,15015621-15015670
          Length = 1580

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 468 LYFNQVISSVYEATHEQLR---IAHHLKHGGRLQYGLVLKRY 584
           ++  ++I  VY  T EQ     + H L+HG  L   L++KR+
Sbjct: 801 IFLEEIIEDVYYMTKEQYANNVVQHILQHGKALVRSLIIKRF 842


>04_04_0419 +
           25086456-25086768,25087302-25087369,25087458-25087681,
           25087929-25088012,25088593-25088806,25089252-25089428,
           25089526-25089645,25089865-25089991,25090104-25090130,
           25090526-25091007
          Length = 611

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 322 KQNLAKACHHLCEIEQDERLVCLLKGLHQ-SYSGNDYSE 435
           KQ+L +A HH+C ++  +R+V ++  +   ++ GN  SE
Sbjct: 391 KQDLKRAAHHVCGVDLTDRVVDIIFHVFDTNHDGNLSSE 429


>02_05_0470 + 29303558-29303681,29303797-29303847,29304811-29305019
          Length = 127

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 508 VASYTEEMTWLK*SPSFLWVSQL*FQNNHYLNKIDVSL 395
           V SY   + WL    +F W++ L F  N+ LN   + L
Sbjct: 79  VCSYDRIIEWLLARSTFFWINHLLFNYNYTLNYAHMKL 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,963,362
Number of Sequences: 37544
Number of extensions: 336557
Number of successful extensions: 673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)