Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0049
(691 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)... 91 5e-18
BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypepti... 91 5e-18
AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A... 79 1e-14
AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A... 79 1e-14
AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A... 79 1e-14
BC150332-1|AAI50333.1| 1011|Homo sapiens CAP-GLY domain containi... 30 8.9
AF041059-1|AAB96784.1| 419|Homo sapiens similar to KIAA0291: DD... 30 8.9
AC005015-1|AAF03524.1| 1046|Homo sapiens KIAA0291; similar roden... 30 8.9
AB006629-1|BAA22960.2| 1024|Homo sapiens KIAA0291 protein. 30 8.9
>X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)
protein.
Length = 509
Score = 90.6 bits (215), Expect = 5e-18
Identities = 54/139 (38%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Frame = +1
Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSE 435
G+AY+P +D ++++ ++R L + LA L ++ DERL LL L SY+G DYS
Sbjct: 205 GFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYST 264
Query: 436 TKAV--IPIESLDSISTKSFPLCMRQLMNN*ELPIT*NMGAGYSMGLFLKGIGVTLEDS* 609
V I ++ +D +STKSFP CMRQL G GLFLKGIG+TLE +
Sbjct: 265 QGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQAL 324
Query: 610 GFGGKNSLR-LWIWDKFEK 663
F + ++ DKF+K
Sbjct: 325 QFWKQEFIKGKMDPDKFDK 343
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +3
Query: 510 HEQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEFIK 635
H+ LR HHL+HGGR+QYGL LK + L+FW++EFIK
Sbjct: 292 HKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIK 333
Score = 54.8 bits (126), Expect = 3e-07
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +2
Query: 11 FIARELELFKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIESTPY---SKID 181
FI +E++L + RF+++ ++++ F K + L + IS++EK Q ++ S+P K+
Sbjct: 120 FIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLG 179
Query: 182 NMKFYKVKFFEVLDLVKARKVFL 250
YK+ F + LDL + RKV+L
Sbjct: 180 FESIYKIPFADALDLFRGRKVYL 202
>BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypeptide
2 (58kDa) protein.
Length = 509
Score = 90.6 bits (215), Expect = 5e-18
Identities = 54/139 (38%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Frame = +1
Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSE 435
G+AY+P +D ++++ ++R L + LA L ++ DERL LL L SY+G DYS
Sbjct: 205 GFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYST 264
Query: 436 TKAV--IPIESLDSISTKSFPLCMRQLMNN*ELPIT*NMGAGYSMGLFLKGIGVTLEDS* 609
V I ++ +D +STKSFP CMRQL G GLFLKGIG+TLE +
Sbjct: 265 QGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQAL 324
Query: 610 GFGGKNSLR-LWIWDKFEK 663
F + ++ DKF+K
Sbjct: 325 QFWKQEFIKGKMDPDKFDK 343
Score = 55.2 bits (127), Expect = 2e-07
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +3
Query: 510 HEQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEFIK 635
H+ LR HHL+HGGR+QYGL LK + L+FW++EFIK
Sbjct: 292 HKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIK 333
Score = 54.8 bits (126), Expect = 3e-07
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +2
Query: 11 FIARELELFKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIESTPY---SKID 181
FI +E++L + RF+++ ++++ F K + L + IS++EK Q ++ S+P K+
Sbjct: 120 FIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLG 179
Query: 182 NMKFYKVKFFEVLDLVKARKVFL 250
YK+ F + LDL + RKV+L
Sbjct: 180 FESIYKIPFADALDLFRGRKVYL 202
>AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 79.0 bits (186), Expect = 1e-14
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Frame = +1
Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSE 435
G+AY+P +D ++++ ++R L + LA L ++ DERL LL L SY+ DYS
Sbjct: 205 GFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHLSHSYTSQDYST 264
Query: 436 TKAV--IPIESLDSISTKSFPLCMRQLMNN*ELPIT*NMGAGYSMGLFLKGIGVTLEDS 606
V I ++ +D +STKSFPL M QL G LFLKGIG+TLE +
Sbjct: 265 QGNVGKISLDQIDLLSTKSFPLYMHQLHKALRENHHLCHGGRMQYVLFLKGIGLTLEQT 323
Score = 54.8 bits (126), Expect = 3e-07
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +2
Query: 11 FIARELELFKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIESTPY---SKID 181
FI +E++L + RF+++ ++++ F K + L + IS++EK Q ++ S+P K+
Sbjct: 120 FIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLG 179
Query: 182 NMKFYKVKFFEVLDLVKARKVFL 250
YK+ F + LDL + RKV+L
Sbjct: 180 FESIYKIPFADALDLFRGRKVYL 202
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 510 HEQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEFIK 635
H+ LR HHL HGGR+QY L LK + L+FW++EFIK
Sbjct: 292 HKALRENHHLCHGGRMQYVLFLKGIGLTLEQTLQFWKQEFIK 333
>AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 79.0 bits (186), Expect = 1e-14
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Frame = +1
Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSE 435
G+AY+P +D ++++ ++R L + LA L ++ DERL LL L SY+ DYS
Sbjct: 205 GFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHLSHSYTSQDYST 264
Query: 436 TKAV--IPIESLDSISTKSFPLCMRQLMNN*ELPIT*NMGAGYSMGLFLKGIGVTLEDS 606
V I ++ +D +STKSFPL M QL G LFLKGIG+TLE +
Sbjct: 265 QGNVGKISLDQIDLLSTKSFPLYMHQLHKALRENHHLCHGGRMQYVLFLKGIGLTLEQT 323
Score = 54.8 bits (126), Expect = 3e-07
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +2
Query: 11 FIARELELFKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIESTPY---SKID 181
FI +E++L + RF+++ ++++ F K + L + IS++EK Q ++ S+P K+
Sbjct: 120 FIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLG 179
Query: 182 NMKFYKVKFFEVLDLVKARKVFL 250
YK+ F + LDL + RKV+L
Sbjct: 180 FESIYKIPFADALDLFRGRKVYL 202
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 510 HEQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEFIK 635
H+ LR HHL HGGR+QY L LK + L+FW++EFIK
Sbjct: 292 HKALRENHHLCHGGRMQYVLFLKGIGLTLEQTLQFWKQEFIK 333
>AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 79.0 bits (186), Expect = 1e-14
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Frame = +1
Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSE 435
G+AY+P +D ++++ ++R L + LA L ++ DERL LL L SY+ DYS
Sbjct: 205 GFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHLSHSYTSQDYST 264
Query: 436 TKAV--IPIESLDSISTKSFPLCMRQLMNN*ELPIT*NMGAGYSMGLFLKGIGVTLEDS 606
V I ++ +D +STKSFPL M QL G LFLKGIG+TLE +
Sbjct: 265 QGNVGKISLDQIDLLSTKSFPLYMHQLHKALRENHHLCHGGRMQYVLFLKGIGLTLEQT 323
Score = 54.8 bits (126), Expect = 3e-07
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +2
Query: 11 FIARELELFKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIESTPY---SKID 181
FI +E++L + RF+++ ++++ F K + L + IS++EK Q ++ S+P K+
Sbjct: 120 FIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLG 179
Query: 182 NMKFYKVKFFEVLDLVKARKVFL 250
YK+ F + LDL + RKV+L
Sbjct: 180 FESIYKIPFADALDLFRGRKVYL 202
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 510 HEQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEFIK 635
H+ LR HHL HGGR+QY L LK + L+FW++EFIK
Sbjct: 292 HKALRENHHLCHGGRMQYVLFLKGIGLTLEQTLQFWKQEFIK 333
>BC150332-1|AAI50333.1| 1011|Homo sapiens CAP-GLY domain containing
linker protein 2 protein.
Length = 1011
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 322 KQNLAKACHHLCEIEQDERLVCLLKGLHQSY 414
+ +AKA H+CE+E++ + LLK H+ Y
Sbjct: 379 RAEVAKATSHICEVEKE---IALLKAQHEQY 406
>AF041059-1|AAB96784.1| 419|Homo sapiens similar to KIAA0291: DDBJ
Accession Number AB006629, restin and CLIP-170 protein.
Length = 419
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 322 KQNLAKACHHLCEIEQDERLVCLLKGLHQSY 414
+ +AKA H+CE+E++ + LLK H+ Y
Sbjct: 338 RAEVAKATSHICEVEKE---IALLKAQHEQY 365
>AC005015-1|AAF03524.1| 1046|Homo sapiens KIAA0291; similar rodent
cytoplasmic linker protein CLIP-115 and restin protein.
Length = 1046
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 322 KQNLAKACHHLCEIEQDERLVCLLKGLHQSY 414
+ +AKA H+CE+E++ + LLK H+ Y
Sbjct: 379 RAEVAKATSHICEVEKE---IALLKAQHEQY 406
>AB006629-1|BAA22960.2| 1024|Homo sapiens KIAA0291 protein.
Length = 1024
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 322 KQNLAKACHHLCEIEQDERLVCLLKGLHQSY 414
+ +AKA H+CE+E++ + LLK H+ Y
Sbjct: 392 RAEVAKATSHICEVEKE---IALLKAQHEQY 419
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,432,949
Number of Sequences: 237096
Number of extensions: 1880682
Number of successful extensions: 3338
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3323
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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