Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0049
(691 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF291873-1|AAG01548.1| 533|Drosophila melanogaster DNA primase ... 94 1e-19
AF160895-1|AAD46835.1| 533|Drosophila melanogaster GM13640p pro... 94 1e-19
AE014296-3340|AAF51580.2| 533|Drosophila melanogaster CG5553-PA... 94 1e-19
AY113300-1|AAM29305.1| 297|Drosophila melanogaster AT26020p pro... 30 3.4
AY052140-1|AAK93564.1| 592|Drosophila melanogaster SD09786p pro... 30 3.4
AE013599-2425|AAF57898.2| 592|Drosophila melanogaster CG30456-P... 30 3.4
BT025848-1|ABF85748.1| 1384|Drosophila melanogaster IP14838p pro... 29 6.0
BT021360-1|AAX33508.1| 1458|Drosophila melanogaster LP14662p pro... 29 6.0
AE014134-124|AAS64635.1| 1503|Drosophila melanogaster CG11838-PB... 29 6.0
AE014134-123|AAF51483.1| 1443|Drosophila melanogaster CG11838-PA... 29 6.0
>AF291873-1|AAG01548.1| 533|Drosophila melanogaster DNA primase
protein.
Length = 533
Score = 94.3 bits (224), Expect = 1e-19
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Frame = +1
Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSE 435
GYAY+ D +S++ + + ++Q L A + ++E DER+ LK LH SY+G DY+
Sbjct: 217 GYAYVNTHDLVSLVGTKQQDEIEQGLQAAKTMVEDVEADERISRTLKALHNSYTGRDYTV 276
Query: 436 TK-AVIPIESLDSISTKSFPLCMRQLMNN*ELPIT*NMGAGYSMGLFLKGIGVTLEDS*G 612
+ A +PIESLD +S S PLCMR + GLFLKGIGV LEDS
Sbjct: 277 CRDAAVPIESLDQLSKTSMPLCMRMCHEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLR 336
Query: 613 FGGKNSLRLWIWDKFEK 663
F + + DKF +
Sbjct: 337 FWREEFTKKMDADKFTR 353
Score = 65.3 bits (152), Expect = 7e-11
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Frame = +2
Query: 11 FIARELELFKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIEST---PYSKID 181
F+ARE+ELF+ +FA + ++ F + N ++E +K+EV L EST +KI+
Sbjct: 132 FVAREMELFRYKFAALSSFEVKQFLEANGFEIHPLTEAQKDEVKDGLYESTVGQSVAKIE 191
Query: 182 NMKFYKVKFFEVLDLVKARKVFL 250
+ FYKV F +VLDLV+ R+ FL
Sbjct: 192 LLDFYKVPFTQVLDLVRGRRCFL 214
Score = 58.4 bits (135), Expect = 8e-09
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = +3
Query: 510 HEQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEFIKIMD 644
HE +R HH+KH GR+QYGL LK LRFWREEF K MD
Sbjct: 303 HEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLRFWREEFTKKMD 347
>AF160895-1|AAD46835.1| 533|Drosophila melanogaster GM13640p
protein.
Length = 533
Score = 94.3 bits (224), Expect = 1e-19
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Frame = +1
Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSE 435
GYAY+ D +S++ + + ++Q L A + ++E DER+ LK LH SY+G DY+
Sbjct: 217 GYAYVNTHDLVSLVGTKQQDEIEQGLQAAKTMVEDVEADERISRTLKALHNSYTGRDYTV 276
Query: 436 TK-AVIPIESLDSISTKSFPLCMRQLMNN*ELPIT*NMGAGYSMGLFLKGIGVTLEDS*G 612
+ A +PIESLD +S S PLCMR + GLFLKGIGV LEDS
Sbjct: 277 CRDAAVPIESLDQLSKTSMPLCMRMCHEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLR 336
Query: 613 FGGKNSLRLWIWDKFEK 663
F + + DKF +
Sbjct: 337 FWREEFTKKMDADKFTR 353
Score = 68.1 bits (159), Expect = 1e-11
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Frame = +2
Query: 11 FIARELELFKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIEST---PYSKID 181
F+ARE+ELF+ +FA + G ++ F + N ++E +K+EV L EST +KI+
Sbjct: 132 FVAREMELFRFKFAALSGFEVKQFLEANGFEIHPLTEAQKDEVKDGLYESTVGQSVAKIE 191
Query: 182 NMKFYKVKFFEVLDLVKARKVFL 250
+ FYKV F +VLDLV+ R+ FL
Sbjct: 192 LLDFYKVPFTQVLDLVRGRRCFL 214
Score = 58.4 bits (135), Expect = 8e-09
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = +3
Query: 510 HEQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEFIKIMD 644
HE +R HH+KH GR+QYGL LK LRFWREEF K MD
Sbjct: 303 HEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLRFWREEFTKKMD 347
>AE014296-3340|AAF51580.2| 533|Drosophila melanogaster CG5553-PA
protein.
Length = 533
Score = 94.3 bits (224), Expect = 1e-19
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Frame = +1
Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSE 435
GYAY+ D +S++ + + ++Q L A + ++E DER+ LK LH SY+G DY+
Sbjct: 217 GYAYVNTHDLVSLVGTKQQDEIEQGLQAAKTMVEDVEADERISRTLKALHNSYTGRDYTV 276
Query: 436 TK-AVIPIESLDSISTKSFPLCMRQLMNN*ELPIT*NMGAGYSMGLFLKGIGVTLEDS*G 612
+ A +PIESLD +S S PLCMR + GLFLKGIGV LEDS
Sbjct: 277 CRDAAVPIESLDQLSKTSMPLCMRMCHEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLR 336
Query: 613 FGGKNSLRLWIWDKFEK 663
F + + DKF +
Sbjct: 337 FWREEFTKKMDADKFTR 353
Score = 65.3 bits (152), Expect = 7e-11
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Frame = +2
Query: 11 FIARELELFKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIEST---PYSKID 181
F+ARE+ELF+ +FA + ++ F + N ++E +K+EV L EST +KI+
Sbjct: 132 FVAREMELFRYKFAALSSFEVKQFLEANGFEIHPLTEAQKDEVKDGLYESTVGQSVAKIE 191
Query: 182 NMKFYKVKFFEVLDLVKARKVFL 250
+ FYKV F +VLDLV+ R+ FL
Sbjct: 192 LLDFYKVPFTQVLDLVRGRRCFL 214
Score = 58.4 bits (135), Expect = 8e-09
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = +3
Query: 510 HEQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEFIKIMD 644
HE +R HH+KH GR+QYGL LK LRFWREEF K MD
Sbjct: 303 HEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLRFWREEFTKKMD 347
>AY113300-1|AAM29305.1| 297|Drosophila melanogaster AT26020p
protein.
Length = 297
Score = 29.9 bits (64), Expect = 3.4
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +2
Query: 35 FKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIESTPYSKIDNMKFYKVKFFE 214
FK R VM+ +E +L ++ ++E+I ++++ ++ KF KV F+
Sbjct: 88 FKNRDIVMK-PLIESCCRLEKRLRALLTTTNESEIINDIVDCHEFNVYYQGKFRKVNEFQ 146
Query: 215 VLDLVKAR----KVFLNVDTLIYLTEI 283
VLD R KVF+ D I TEI
Sbjct: 147 VLDHKLKRSYRSKVFI-FDKCIIYTEI 172
>AY052140-1|AAK93564.1| 592|Drosophila melanogaster SD09786p
protein.
Length = 592
Score = 29.9 bits (64), Expect = 3.4
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +2
Query: 35 FKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIESTPYSKIDNMKFYKVKFFE 214
FK R VM+ +E +L ++ ++E+I ++++ ++ KF KV F+
Sbjct: 383 FKNRDIVMK-PLIESCCRLEKRLRALLTTTNESEIINDIVDCHEFNVYYQGKFRKVNEFQ 441
Query: 215 VLDLVKAR----KVFLNVDTLIYLTEI 283
VLD R KVF+ D I TEI
Sbjct: 442 VLDHKLKRSYRSKVFI-FDKCIIYTEI 467
>AE013599-2425|AAF57898.2| 592|Drosophila melanogaster CG30456-PA
protein.
Length = 592
Score = 29.9 bits (64), Expect = 3.4
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +2
Query: 35 FKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNLIESTPYSKIDNMKFYKVKFFE 214
FK R VM+ +E +L ++ ++E+I ++++ ++ KF KV F+
Sbjct: 383 FKNRDIVMK-PLIESCCRLEKRLRALLTTTNESEIINDIVDCHEFNVYYQGKFRKVNEFQ 441
Query: 215 VLDLVKAR----KVFLNVDTLIYLTEI 283
VLD R KVF+ D I TEI
Sbjct: 442 VLDHKLKRSYRSKVFI-FDKCIIYTEI 467
>BT025848-1|ABF85748.1| 1384|Drosophila melanogaster IP14838p
protein.
Length = 1384
Score = 29.1 bits (62), Expect = 6.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 RKVFLNVDTLIYLTEISYQFLQHSIEHI*NK-IWPKLAIICVKLNKMNDLFVC 391
RK LN +Y+ E + SI I +K IW LA +CV N+++ VC
Sbjct: 686 RKQVLNFS--LYVAEGNMDMAYRSIRSIQSKVIWTNLAKMCVHTNRLDVAKVC 736
>BT021360-1|AAX33508.1| 1458|Drosophila melanogaster LP14662p
protein.
Length = 1458
Score = 29.1 bits (62), Expect = 6.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 RKVFLNVDTLIYLTEISYQFLQHSIEHI*NK-IWPKLAIICVKLNKMNDLFVC 391
RK LN +Y+ E + SI I +K IW LA +CV N+++ VC
Sbjct: 760 RKQVLNFS--LYVAEGNMDMAYRSIRSIQSKVIWTNLAKMCVHTNRLDVAKVC 810
>AE014134-124|AAS64635.1| 1503|Drosophila melanogaster CG11838-PB,
isoform B protein.
Length = 1503
Score = 29.1 bits (62), Expect = 6.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 RKVFLNVDTLIYLTEISYQFLQHSIEHI*NK-IWPKLAIICVKLNKMNDLFVC 391
RK LN +Y+ E + SI I +K IW LA +CV N+++ VC
Sbjct: 805 RKQVLNFS--LYVAEGNMDMAYRSIRSIQSKVIWTNLAKMCVHTNRLDVAKVC 855
>AE014134-123|AAF51483.1| 1443|Drosophila melanogaster CG11838-PA,
isoform A protein.
Length = 1443
Score = 29.1 bits (62), Expect = 6.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 RKVFLNVDTLIYLTEISYQFLQHSIEHI*NK-IWPKLAIICVKLNKMNDLFVC 391
RK LN +Y+ E + SI I +K IW LA +CV N+++ VC
Sbjct: 745 RKQVLNFS--LYVAEGNMDMAYRSIRSIQSKVIWTNLAKMCVHTNRLDVAKVC 795
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,077,530
Number of Sequences: 53049
Number of extensions: 597427
Number of successful extensions: 1401
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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