Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0049
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81137-1|CAB03469.2| 503|Caenorhabditis elegans Hypothetical pr... 75 6e-14
X74228-1|CAA52299.1| 491|Caenorhabditis elegans pha-1 protein. 29 2.4
X73845-1|CAA52066.1| 491|Caenorhabditis elegans pha1 protein. 29 2.4
AL032642-5|CAD91711.1| 453|Caenorhabditis elegans Hypothetical ... 29 2.4
AL032642-4|CAA21655.1| 491|Caenorhabditis elegans Hypothetical ... 29 2.4
AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical... 29 2.4
Z69637-3|CAA93468.1| 173|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z70213-5|CAA94174.1| 256|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z29116-2|CAA82368.3| 374|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81038-17|CAB76409.1| 381|Caenorhabditis elegans Hypothetical p... 27 9.6
AL032656-5|CAB76732.1| 381|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z81137-1|CAB03469.2| 503|Caenorhabditis elegans Hypothetical
protein W02D9.1 protein.
Length = 503
Score = 74.5 bits (175), Expect = 6e-14
Identities = 42/141 (29%), Positives = 77/141 (54%), Gaps = 5/141 (3%)
Frame = +1
Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLAKACHHLCEIEQDERLVCLLKGL-HQSYSGNDYS 432
G+AY P D +++L + + ++ +A++ HL +E++ RL+ L L + +YSG DY+
Sbjct: 224 GFAYFPFDDLVTILVTKMKNNMMAAMARSFKHLAILEEEGRLLPRLSLLSNNAYSGKDYN 283
Query: 433 ----ETKAVIPIESLDSISTKSFPLCMRQLMNN*ELPIT*NMGAGYSMGLFLKGIGVTLE 600
+ ++ +D +S +SF CM+Q+ N+ + GA GLFLKGIG++L+
Sbjct: 284 GEQPDGSIIVTRHMIDKLSRRSFAPCMKQMHNHLRVNHHLKYGARRQYGLFLKGIGLSLD 343
Query: 601 DS*GFGGKNSLRLWIWDKFEK 663
++ + DKF+K
Sbjct: 344 EAIAMMRDEFTKKITSDKFDK 364
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +3
Query: 510 HEQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEFIK 635
H LR+ HHLK+G R QYGL LK + R+EF K
Sbjct: 314 HNHLRVNHHLKYGARRQYGLFLKGIGLSLDEAIAMMRDEFTK 355
>X74228-1|CAA52299.1| 491|Caenorhabditis elegans pha-1 protein.
Length = 491
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 304 QYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQ----SYSGNDYSETKAVIPIESLDS 471
QY LKQ + K IE +R+ C++ +HQ S G+DY + + + I+ + S
Sbjct: 144 QYARFLKQTM-KIMVIKIRIEDSKRVCCMITDVHQVIHKSLIGSDYDKVEEFVGIDQI-S 201
Query: 472 IST 480
ST
Sbjct: 202 FST 204
>X73845-1|CAA52066.1| 491|Caenorhabditis elegans pha1 protein.
Length = 491
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 304 QYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQ----SYSGNDYSETKAVIPIESLDS 471
QY LKQ + K IE +R+ C++ +HQ S G+DY + + + I+ + S
Sbjct: 144 QYARFLKQTM-KIMVIKIRIEDSKRVCCMITDVHQVIHKSLIGSDYDKVEEFVGIDQI-S 201
Query: 472 IST 480
ST
Sbjct: 202 FST 204
>AL032642-5|CAD91711.1| 453|Caenorhabditis elegans Hypothetical
protein Y48A6C.5b protein.
Length = 453
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 304 QYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQ----SYSGNDYSETKAVIPIESLDS 471
QY LKQ + K IE +R+ C++ +HQ S G+DY + + + I+ + S
Sbjct: 106 QYARFLKQTM-KIMVIKIRIEDSKRVCCMITDVHQVIHKSLIGSDYDKVEEFVGIDQI-S 163
Query: 472 IST 480
ST
Sbjct: 164 FST 166
>AL032642-4|CAA21655.1| 491|Caenorhabditis elegans Hypothetical
protein Y48A6C.5a protein.
Length = 491
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 304 QYRTHLKQNLAKACHHLCEIEQDERLVCLLKGLHQ----SYSGNDYSETKAVIPIESLDS 471
QY LKQ + K IE +R+ C++ +HQ S G+DY + + + I+ + S
Sbjct: 144 QYARFLKQTM-KIMVIKIRIEDSKRVCCMITDVHQVIHKSLIGSDYDKVEEFVGIDQI-S 201
Query: 472 IST 480
ST
Sbjct: 202 FST 204
>AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical
protein Y37A1B.9 protein.
Length = 520
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 89 LNNLCYTTISEDEKNEVIQNLIESTPYSKIDNMKFYKVKFFEVLD 223
LN T +SED+ +V QNL E K++N + FF D
Sbjct: 66 LNFNSNTDLSEDQLKKVFQNLKELDGDLKVENSNLTSLSFFSSYD 110
>Z69637-3|CAA93468.1| 173|Caenorhabditis elegans Hypothetical
protein F35G2.3 protein.
Length = 173
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +2
Query: 125 EKNEVIQNLIESTPYSKIDNMKFYKVKFFEVLD-LVKARKVFLNVDTLIYLTEISYQF 295
E+NEVI+ L + K+++++F + E++D LV+ARK+ + +I L + +F
Sbjct: 86 ERNEVIKELSQ-----KLESLEFAEEDANELVDDLVQARKIIKEKNEMIELLKFEIEF 138
>Z70213-5|CAA94174.1| 256|Caenorhabditis elegans Hypothetical
protein ZK930.6 protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -2
Query: 189 FILSILE*GVDSIKFCITSFFSSSEIVV*HRLFSLKNTSSRSPLMTANLILNSSNSLAMN 10
F++ IL IK+C + + + RL+ L+ +R P L+L SS+ L +
Sbjct: 3 FLILILNFQSLLIKYCFDARCTMFTRIYIERLYKLQKDFARWPRFLKLLLLGSSSVLCAH 62
Query: 9 LVP 1
+VP
Sbjct: 63 VVP 65
>Z29116-2|CAA82368.3| 374|Caenorhabditis elegans Hypothetical
protein ZK507.3 protein.
Length = 374
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 143 QNLIESTPYSKIDNMKFYKVKFFEVLDLVKARKVFLNVDTLIYLTEISYQFLQHSI 310
+ L Y+K + F K+K +E + K ++L DTL+Y +++ + FL+ +I
Sbjct: 228 KGLTRPDAYAKKQEL-FTKLKTYEKEPMFKVISIYL--DTLVYDSDVKFGFLRDAI 280
>Z81038-17|CAB76409.1| 381|Caenorhabditis elegans Hypothetical
protein Y106G6E.1 protein.
Length = 381
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 116 SEDEKNEVIQNLIESTPYSKIDNMKFYKVKFFEVLDLVKARKVFLNVD-TLIYLTEISYQ 292
S + + EVI +++ S + +MK K EVLD + K D T +Y + YQ
Sbjct: 232 SSNNQAEVIFDMLGYPTDSDVSSMKVSSTKLQEVLDSYEYNKSKTTADLTYLYTQTVIYQ 291
>AL032656-5|CAB76732.1| 381|Caenorhabditis elegans Hypothetical
protein Y106G6E.1 protein.
Length = 381
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 116 SEDEKNEVIQNLIESTPYSKIDNMKFYKVKFFEVLDLVKARKVFLNVD-TLIYLTEISYQ 292
S + + EVI +++ S + +MK K EVLD + K D T +Y + YQ
Sbjct: 232 SSNNQAEVIFDMLGYPTDSDVSSMKVSSTKLQEVLDSYEYNKSKTTADLTYLYTQTVIYQ 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,323,518
Number of Sequences: 27780
Number of extensions: 320291
Number of successful extensions: 895
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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