Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0049
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   4.8  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   4.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.4  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 358 EIEQDERLVCLLK 396
           E  QDERL+C +K
Sbjct: 61  EFPQDERLMCYMK 73


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 358 EIEQDERLVCLLK 396
           E  QDERL+C +K
Sbjct: 35  EFPQDERLMCYMK 47


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +2

Query: 140 IQNLIESTPYSKIDNMKFYKVKFF 211
           +QN +    ++  D++K Y ++FF
Sbjct: 287 LQNSLNGKNFNNDDDIKSYLIQFF 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,941
Number of Sequences: 438
Number of extensions: 3757
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)