Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0049
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67320.1 68414.m07662 DNA primase, large subunit family conta...    61   6e-10
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    29   2.2  
At1g44900.1 68414.m05144 DNA replication licensing factor, putat...    29   3.8  
At1g09060.2 68414.m01011 transcription factor jumonji (jmjC) dom...    28   6.7  
At1g09060.1 68414.m01010 transcription factor jumonji (jmjC) dom...    28   6.7  

>At1g67320.1 68414.m07662 DNA primase, large subunit family contains
           Pfam profile PF04104: Eukaryotic-type DNA primase, large
           subunit; similar to DNA primase large subunit (EC
           2.7.7.-) (DNA primase 58 kDa subunit) (p58)
           (Swiss-Prot:P49643) [Homo sapiens]
          Length = 449

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
 Frame = +1

Query: 256 GYAYIPHRDFISVLAAQYRTHLKQNLA----KACHHLCEIEQDERLVCLLKGLHQSYSGN 423
           G+A++     +S++  Q+R+HL + L     K    + E E+D RL  +++ L  SY G 
Sbjct: 195 GFAFVAGTQLVSLVVTQFRSHLSKALILTNRKWTTTIREREKD-RLTPIVEALSTSYLGP 253

Query: 424 DYSETK--AVIPIESLDSISTKSFPLCMRQLMNN*ELPIT*NMGAGYSMGLFLK 579
           DYS++   A I ++ +D +S  SFPLCMR L            G    +GLFLK
Sbjct: 254 DYSQSNEYADISLKDIDQVSKSSFPLCMRHLFEKLREDHHLKHGGRMQLGLFLK 307



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/41 (58%), Positives = 26/41 (63%)
 Frame = +3

Query: 513 EQLRIAHHLKHGGRLQYGLVLKRYWCDTGRLLRFWREEFIK 635
           E+LR  HHLKHGGR+Q GL LK         L FWREEF K
Sbjct: 286 EKLREDHHLKHGGRMQLGLFLK-----LDDALAFWREEFTK 321



 Score = 31.1 bits (67), Expect = 0.72
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
 Frame = +2

Query: 11  FIARELELFKMRFAVMRGERLEVFFKLNNLCYTTISEDEKNEVIQNL-----IESTPYSK 175
           F++ E  LF+ RF + + E          L Y  +   E   + + L           S 
Sbjct: 109 FLSMETALFRHRFRLKKIEEQRAIVGEFGLPYKAVIGAELESLKERLGLVARSHGQISSD 168

Query: 176 IDNMKFYKVKFFEVLDLVKARKVFL 250
           ++N+ +YKV F EV DLV +R+V L
Sbjct: 169 VENI-YYKVPFEEVPDLVASRRVLL 192


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 655 IYPKSIILMNSSLQNLKSLPVSHQYLLRTS 566
           I P  +I M SSL  LK+L  S QYL+ +S
Sbjct: 333 INPSHVIYMPSSLTCLKTLKTSDQYLMASS 362


>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
           similar to DNA replication licensing factor MCM2 from
           {Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 928

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 334 PNFVLNVFDTVLQELI*NLCEVYKRIHIKKYFSCFNQI*NFKEFNLIEFHI-VYFRVG 164
           P  VL V + V +++I +L   YK IH K Y    N   N +  N+ + H+    R+G
Sbjct: 270 PQPVLEVMEEVSEKVIFDLHPNYKNIHTKIYVRVTNLPVNDQIRNIRQIHLNTMIRIG 327


>At1g09060.2 68414.m01011 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 930

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +1

Query: 325 QNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSETKAVIPIESLDSISTKSFPLC 498
           ++L + CH  C+ +  ER++  LK   +++  N  S   + I +E ++ +      LC
Sbjct: 200 ESLGEICHQ-CQRKDRERIISCLKCNQRAFCHNCLSARYSEISLEEVEKVCPACRGLC 256


>At1g09060.1 68414.m01010 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 930

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +1

Query: 325 QNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSETKAVIPIESLDSISTKSFPLC 498
           ++L + CH  C+ +  ER++  LK   +++  N  S   + I +E ++ +      LC
Sbjct: 200 ESLGEICHQ-CQRKDRERIISCLKCNQRAFCHNCLSARYSEISLEEVEKVCPACRGLC 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,349,851
Number of Sequences: 28952
Number of extensions: 293263
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)