Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0048
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   7.1  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   7.1  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    25   9.3  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 314 IVNHFV*YEVAPSMN*YFNFRISQIKIHYKRFHTHASIK 198
           I+   V Y V   +N  FN+ + Q KIH     T AS K
Sbjct: 28  IIGDAVHYIVNDHLNRVFNYTVDQQKIHAALITTFASGK 66


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 533 WKKYHYQKKPHLFEERERESENTLYCKPTQ 444
           W+K  Y+K P ++E+  R     +   PTQ
Sbjct: 269 WEKESYEKSPSVYEKTFRLFSEKISHNPTQ 298


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 258 VKISIHRGRYLILYKVIYNYLLM 326
           VK+S HRG +L  Y V +N  L+
Sbjct: 162 VKVSGHRGYFLRQYGVFFNLALI 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,627
Number of Sequences: 5004
Number of extensions: 46088
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)