Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0048
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1519 + 27390204-27390590,27390591-27390809,27392516-273929...    29   3.2  
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121           28   7.3  
08_02_0854 - 21905054-21906308,21906396-21907300                       28   7.3  
07_01_0658 + 4923205-4923334,4923448-4923526,4923629-4923723,492...    28   7.3  
05_01_0327 - 2565574-2565654,2566037-2566099,2566511-2566591,256...    28   7.3  
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990     28   7.3  

>07_03_1519 +
           27390204-27390590,27390591-27390809,27392516-27392962,
           27393076-27393274,27393372-27393456,27393566-27393998
          Length = 589

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -2

Query: 494 EERERESENTLYCKPTQFTLKKKIACVQFTRVRSETFKKLK--YNYPKC 354
           +E ERE ++ L  +  + T KKK+AC  F + RS  FKK++   N P C
Sbjct: 31  QELERELKHELEEEKMERT-KKKLAC--FQKTRSGAFKKVRSEVNKPIC 76


>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
          Length = 798

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 556 EPFRSLKFGKNIITKKNLTYLKRERERVRIHFIANQHN 443
           EP +  KFG  +  K+     K+ ++R+ +H     HN
Sbjct: 120 EPGKPEKFGSAVFAKEGYVNWKKGKDRLTVHSNCKTHN 157


>08_02_0854 - 21905054-21906308,21906396-21907300
          Length = 719

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 556 EPFRSLKFGKNIITKKNLTYLKRERERVRIHFIANQHN 443
           EP +  KFG  +  K+     K+ ++R+ +H     HN
Sbjct: 120 EPGKPEKFGSAVFAKEGYVNWKKGKDRLTVHSNCKTHN 157


>07_01_0658 +
           4923205-4923334,4923448-4923526,4923629-4923723,
           4923802-4923851,4924216-4924340,4924703-4924769,
           4924871-4924960,4925281-4925392,4925597-4925667
          Length = 272

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 248 SQIKIHYKRFHTHASIKTSHRWRCIKNKILYTYVL 144
           + + +  K F +HA     + WRC++    Y +VL
Sbjct: 56  AMVSVILKSFPSHAVFGEENGWRCVEKSADYVWVL 90


>05_01_0327 -
           2565574-2565654,2566037-2566099,2566511-2566591,
           2566710-2566787,2566892-2566984,2567108-2567225,
           2567568-2567695,2567808-2568083,2568763-2568917,
           2568997-2569140,2569427-2569844
          Length = 544

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 539 KIWKKYHYQKKPHL 498
           ++WKK+HY  +PHL
Sbjct: 368 QLWKKFHYIPRPHL 381


>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
          Length = 798

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 556 EPFRSLKFGKNIITKKNLTYLKRERERVRIHFIANQHN 443
           EP +  KFG  +  K+     K+ ++R+ +H     HN
Sbjct: 120 EPGKPEKFGSAVFAKEGYVNWKKGKDRLTVHSNCKTHN 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,508,769
Number of Sequences: 37544
Number of extensions: 227741
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)