Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0048
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              30   1.9  
SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3)                  29   2.4  
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            29   4.3  
SB_46007| Best HMM Match : Borrelia_lipo_2 (HMM E-Value=3.7)           28   5.7  
SB_14952| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -2

Query: 533 WKKYHYQKKPHLFEERERESENTLYCKPTQFTLKKKIACVQFTRVRSETFKKLKYNYPK 357
           W+K   QKK    +ERE++ E     K  +  + +KI  ++  + RSE  K+ + N+ K
Sbjct: 151 WQKEMKQKKDEQVDEREKQREKQRQEKIMREQMSRKIK-LRIVQKRSEDDKRQESNHNK 208


>SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3)
          Length = 274

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -2

Query: 533 WKKYHYQKKPHLFEERERESENTLYCKPTQFTLKKKIACVQFTRVRSETFKKLKYNYPK 357
           W+K   QKK    +ERE++ E     K  +  + +KI  ++  + RSE  K+ + N+ K
Sbjct: 155 WQKEMKQKKDEQVDEREKQREKHRQEKIMREQMSRKIK-LRIVQKRSEDDKRQESNHNK 212


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 310 TIIY**QNFTNNILRHLG*LYFNFLKVSLLTRVNCTHAIFFFNVNCV 450
           TI+Y   + +  I+     + +N L+ S     NC  A FF N NC+
Sbjct: 375 TIVYVHHSLSITIVYAHRSVNYNCLRASFFVNHNCLRASFFVNHNCL 421


>SB_46007| Best HMM Match : Borrelia_lipo_2 (HMM E-Value=3.7)
          Length = 187

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 461 YCKPTQFTLKKKIACVQFTRVRSETFKKLKYNYPKCLSILL 339
           + K T+ +  KKI   + T+ R  T KKL+  Y +CL  LL
Sbjct: 88  HVKQTKISAAKKIRA-EVTKERHSTAKKLRKYYIQCLKQLL 127


>SB_14952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
 Frame = -2

Query: 578 TFWQLYKRTI*KFKIWKKYHYQKKPHLFEERERESENTL-------YCKPT-QFTLKKKI 423
           +F + Y+ ++  +   KKY Y    H F  + + S  T        Y   T  FT K + 
Sbjct: 323 SFTRKYQYSLVTYSFTKKYQYSLVTHSFTRKYQYSLVTYSFTRKYQYSLVTYSFTRKYQY 382

Query: 422 ACVQFTRVRSETFKKLKYNYPKCLSILLVKF 330
           + V  +  R   +  +KY++ K     LVK+
Sbjct: 383 SLVTHSFTRKYQYSLVKYSFTKKYQYSLVKY 413


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,881,395
Number of Sequences: 59808
Number of extensions: 302090
Number of successful extensions: 710
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)