Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0048
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-6|CAA87045.3|  371|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical p...    29   2.1  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z73896-8|CAA98061.1|  525|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z73422-12|CAJ76980.1|  525|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z73422-10|CAA97772.1|  525|Caenorhabditis elegans Hypothetical p...    27   8.6  

>Z46934-6|CAA87045.3|  371|Caenorhabditis elegans Hypothetical
           protein ZK1320.7 protein.
          Length = 371

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 577 HFGNFTREPFRSLKFGKNIITKKNLTYLKRERERVRIHFIAN 452
           HFG F R   ++LK  K   TKK++   K + +R+  +F A+
Sbjct: 315 HFGPFDRNAVKNLKVAKVPTTKKDIIKQKLKEDRIAKNFRAD 356


>Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical
           protein C15H11.6 protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 461 YCKPTQFTLKKKIACVQFTRVRSETFKKLKYNYPKC--LSILLVKFCH 324
           + K T+F  +  + C+  TRV S   + + Y YP+   +S    + CH
Sbjct: 63  FSKNTEFVERDMLMCLTKTRVMSVVLQHIGYKYPRISGISFSNNRLCH 110


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 355 HLG*LYFNFLKVSLLTRVNCTHAIFFFNVN 444
           H G  YF +  V+L+  VN T +IFF+ VN
Sbjct: 99  HFGNAYFQYFMVTLMA-VNRTTSIFFYFVN 127



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 355 HLG*LYFNFLKVSLLTRVNCTHAIFFFNVN 444
           H G  YF +  V+L++ +N T +IFF+ VN
Sbjct: 327 HFGNAYFQYFMVTLMS-LNRTTSIFFYFVN 355


>Z73896-8|CAA98061.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.9 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 471 LTLSLSLFK*VRF-FLVMIFFPNFKLLNGSLVKLPKCRSKQI 593
           L LS   F   RF F+  +FFP F L N  + K   CR+K I
Sbjct: 19  LMLSRYKFLKSRFKFVFALFFPGFSLFN--IEKKTNCRNKMI 58


>Z73422-12|CAJ76980.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.9 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 471 LTLSLSLFK*VRF-FLVMIFFPNFKLLNGSLVKLPKCRSKQI 593
           L LS   F   RF F+  +FFP F L N  + K   CR+K I
Sbjct: 19  LMLSRYKFLKSRFKFVFALFFPGFSLFN--IEKKTNCRNKMI 58


>Z73422-10|CAA97772.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.6a protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 471 LTLSLSLFK*VRF-FLVMIFFPNFKLLNGSLVKLPKCRSKQI 593
           L LS   F   RF F+  +FFP F L N  + K   CR+K I
Sbjct: 19  LMLSRYKFLKSRFKFVFALFFPGFSLFN--IEKKTNCRNKMI 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,009,728
Number of Sequences: 27780
Number of extensions: 252029
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)