Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0048
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 238 KFTTRGFIHTLVLKHLTDGAVLKI 167
           ++TT GF+ T     LTD    K+
Sbjct: 196 RYTTEGFLTTCSFDFLTDDEDTKV 219


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 238 KFTTRGFIHTLVLKHLTDGAVLKI 167
           ++TT GF+ T     LTD    K+
Sbjct: 196 RYTTEGFLTTCSFDFLTDDEDTKV 219


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 241 IWDIRKLKYQFIEGATSYYT 300
           +W + + K  F +G T +YT
Sbjct: 453 LWTVLRDKGHFDDGTTRFYT 472


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 528 FPNFKLLNGSLVKLPKCRSKQITC 599
           F N  LL   +  +P C  K + C
Sbjct: 299 FGNKALLTPGVTMIPACTCKAVAC 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,979
Number of Sequences: 438
Number of extensions: 3365
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)