Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0046
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    30   0.28 
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    29   0.64 
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   7.9  

>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 511 DLNFCINKLKTNKKNPSDGGHIKGKTNLLFLFNSEYFHIYLPFKPSLG 654
           DL+F  NK + + + P     +  K  L++     Y H++L + PSLG
Sbjct: 202 DLSFVDNKTRFSSRKPGASQILSSKVQLMY-----YVHLFLNYFPSLG 244


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 42  SSVYKGNKKKKRSISSSAQLNNKKKRLQTTEVSN 143
           SSV K N K+KR +    +   KKK L+  E+S+
Sbjct: 186 SSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSD 219


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 36  VCSSVYKGNKKKKRSISSSAQLNNKKK 116
           VC   Y+GN +KKR  + SA+   +KK
Sbjct: 54  VCKLSYEGN-RKKRIYNGSAEAGKEKK 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,223
Number of Sequences: 5004
Number of extensions: 51435
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)