Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0046
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0265 - 8405936-8406367,8406488-8406940,8407073-8407335,840...    29   3.5  
02_01_0180 - 1231444-1231497,1231789-1231887,1231974-1232100,123...    29   3.5  

>02_02_0265 -
           8405936-8406367,8406488-8406940,8407073-8407335,
           8407445-8407751
          Length = 484

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 511 DLNFCINKLKTNKKNPSDGGHIKGKTNLLFLFNSEYFHI 627
           D NFC  K + N +NPS   +   +   + L N++ F I
Sbjct: 288 DENFCTIKARVNIENPSRADYYNPRAGRITLLNNQKFPI 326


>02_01_0180 -
           1231444-1231497,1231789-1231887,1231974-1232100,
           1232430-1232443,1232700-1232765,1232991-1233041,
           1233255-1233314,1233383-1233412,1233430-1233467,
           1233669-1233729
          Length = 199

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/86 (25%), Positives = 42/86 (48%)
 Frame = -1

Query: 490 LPNLLGQLVIKILFIAFFSLSYQSVLCQSGRCFHVASLLWADVIPTSHEQSPLLPFAMSD 311
           +PN++G   I I FIAF       +L Q+   F  +++ W  ++      + L+PF +S 
Sbjct: 16  IPNIIGYFRIIINFIAFAGALCYPILLQNLSAF--SAMAW--MVGLHESLTKLMPFYVSA 71

Query: 310 TLM*TSVLIVKLFYLDYLTRWLLFYQ 233
           +     + +  L +LD    W+ +Y+
Sbjct: 72  STFGAVLDMTWLSFLD--VAWVGYYK 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,377,033
Number of Sequences: 37544
Number of extensions: 290428
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)