Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0046
(694 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M33647-1|AAA69806.1| 928|Homo sapiens RB1 protein. 32 2.2
M28419-1|AAA69808.1| 928|Homo sapiens MIC2 protein. 32 2.2
M27866-1|AAA53484.1| 928|Homo sapiens retinoblastoma susceptibi... 32 2.2
M15400-1|AAA69807.1| 928|Homo sapiens RB1 protein. 32 2.2
L41870-1|AAB59465.1| 928|Homo sapiens retinoblastoma suspectibi... 32 2.2
L11910-1|AAA53483.1| 928|Homo sapiens retinoblastoma susceptibi... 32 2.2
BC040540-1|AAH40540.1| 928|Homo sapiens retinoblastoma 1 (inclu... 32 2.2
BC039060-1|AAH39060.1| 928|Homo sapiens retinoblastoma 1 (inclu... 32 2.2
AL392048-1|CAH72243.1| 928|Homo sapiens retinoblastoma 1 (inclu... 32 2.2
AL136960-1|CAH70901.1| 928|Homo sapiens retinoblastoma 1 (inclu... 32 2.2
AF551763-1|AAN64133.1| 928|Homo sapiens retinoblastoma 1 (inclu... 32 2.2
AB208788-1|BAD92025.1| 960|Homo sapiens Retinoblastoma-associat... 32 2.2
L41897-1|AAA65741.1| 26|Homo sapiens RB1 protein. 30 9.0
>M33647-1|AAA69806.1| 928|Homo sapiens RB1 protein.
Length = 928
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 292 YFKNFIPFMNSLGLVTSNGLPEVENL 317
>M28419-1|AAA69808.1| 928|Homo sapiens MIC2 protein.
Length = 928
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 292 YFKNFIPFMNSLGLVTSNGLPEVENL 317
>M27866-1|AAA53484.1| 928|Homo sapiens retinoblastoma
susceptibility protein protein.
Length = 928
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 292 YFKNFIPFMNSLGLVTSNGLPEVENL 317
>M15400-1|AAA69807.1| 928|Homo sapiens RB1 protein.
Length = 928
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 292 YFKNFIPFMNSLGLVTSNGLPEVENL 317
>L41870-1|AAB59465.1| 928|Homo sapiens retinoblastoma
suspectibility protein protein.
Length = 928
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 292 YFKNFIPFMNSLGLVTSNGLPEVENL 317
>L11910-1|AAA53483.1| 928|Homo sapiens retinoblastoma
susceptibility protein protein.
Length = 928
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 292 YFKNFIPFMNSLGLVTSNGLPEVENL 317
>BC040540-1|AAH40540.1| 928|Homo sapiens retinoblastoma 1
(including osteosarcoma) protein.
Length = 928
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 292 YFKNFIPFMNSLGLVTSNGLPEVENL 317
>BC039060-1|AAH39060.1| 928|Homo sapiens retinoblastoma 1
(including osteosarcoma) protein.
Length = 928
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 292 YFKNFIPFMNSLGLVTSNGLPEVENL 317
>AL392048-1|CAH72243.1| 928|Homo sapiens retinoblastoma 1
(including osteosarcoma) protein.
Length = 928
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 292 YFKNFIPFMNSLGLVTSNGLPEVENL 317
>AL136960-1|CAH70901.1| 928|Homo sapiens retinoblastoma 1
(including osteosarcoma) protein.
Length = 928
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 292 YFKNFIPFMNSLGLVTSNGLPEVENL 317
>AF551763-1|AAN64133.1| 928|Homo sapiens retinoblastoma 1
(including osteosarcoma) protein.
Length = 928
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 292 YFKNFIPFMNSLGLVTSNGLPEVENL 317
>AB208788-1|BAD92025.1| 960|Homo sapiens Retinoblastoma-associated
protein variant protein.
Length = 960
Score = 31.9 bits (69), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPKISQI 693
YF ++PF SLGL T+N LP++ +
Sbjct: 324 YFKNFIPFMNSLGLVTSNGLPEVENL 349
>L41897-1|AAA65741.1| 26|Homo sapiens RB1 protein.
Length = 26
Score = 29.9 bits (64), Expect = 9.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 616 YFHIYLPFKPSLGLSTNNSLPK 681
YF ++PF SLGL T+N LP+
Sbjct: 5 YFKNFIPFMNSLGLVTSNGLPE 26
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,041,478
Number of Sequences: 237096
Number of extensions: 1749333
Number of successful extensions: 2256
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2254
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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