Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0046
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical...    30   1.8  
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical...    29   4.2  
AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical...    29   4.2  
M77697-8|ABB88245.1|  308|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF016438-1|AAB65895.1|  406|Caenorhabditis elegans Nuclear hormo...    28   5.5  

>AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical
           protein Y94H6A.1 protein.
          Length = 498

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -1

Query: 394 FHVASLLWADVIPTSHEQSPLLPFAMSDTL 305
           FHV   +W+DVIPTS   S    FA S TL
Sbjct: 464 FHVR--MWSDVIPTSTSSSSSSIFATSSTL 491


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 599  NNKFVFPLMCPPSDGFFLFVLSLFIQ 522
            N+ F+  L+CPPS  F+ F+L L I+
Sbjct: 1644 NSDFIPLLVCPPSQEFYEFLLRLQIE 1669


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 599  NNKFVFPLMCPPSDGFFLFVLSLFIQ 522
            N+ F+  L+CPPS  F+ F+L L I+
Sbjct: 1644 NSDFIPLLVCPPSQEFYEFLLRLQIE 1669


>AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical
           protein D1007.5b protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 561 GRILFVCFKFIYTKV*VFIYRLRHYQ-ICWVS*LLKYYSLRFFL 433
           G + F C  F+Y+ + +F+  L  Y+ + W+     +YSL+F L
Sbjct: 43  GELFFECTLFLYSVLALFLQYLNIYKTLWWLPKSYWHYSLKFHL 86


>AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical
           protein D1007.5a protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 561 GRILFVCFKFIYTKV*VFIYRLRHYQ-ICWVS*LLKYYSLRFFL 433
           G + F C  F+Y+ + +F+  L  Y+ + W+     +YSL+F L
Sbjct: 43  GELFFECTLFLYSVLALFLQYLNIYKTLWWLPKSYWHYSLKFHL 86


>M77697-8|ABB88245.1|  308|Caenorhabditis elegans Hypothetical
           protein B0303.16 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -1

Query: 490 LPNLLGQLVIKILFIAFF-----SLSYQSVLCQSGRCFHVASLL-WADVI 359
           +  ++ ++ I + F+AF+     S+ Y  +LC+SG C   AS L W   I
Sbjct: 102 MTQIIPKISIILFFLAFYLTHASSMFYIKILCRSGNCTDSASTLSWVVTI 151


>AF016438-1|AAB65895.1|  406|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 133 protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 478 ADLVVPQSINKDLNFCINKLKTNKKNPSDGGHIKGKTNLLFLFNSEYFHIYLPFKPSL 651
           +DLV     N +LNF + +L  N       GH+   T  +    S+  H Y   K  L
Sbjct: 299 SDLVELDPTNVELNFMLIQLCLNSAGQKYQGHVLEATEKILQIQSDNMHEYYTKKLKL 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,758
Number of Sequences: 27780
Number of extensions: 285521
Number of successful extensions: 555
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)