Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0045
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   10.0 
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   10.0 
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   10.0 

>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 349 KYYNNFFLEDFVTSNISPSVICDHVLRIY 263
           ++YN   L+D+       S+I DH+  IY
Sbjct: 130 RFYNKLGLDDYYFQMEPVSIIADHIEIIY 158


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 140 ICNQYYLSLSKIINILNKIYSKNINHLKYKIILKS 36
           + N   L+   ++N +NK+Y ++ ++  Y   L+S
Sbjct: 76  VLNSISLTTGSVVNQINKLYQRSCDNANYLQDLRS 110


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 673 INQSELDIGFFSDELVIVEVPNK 605
           +N +E DIG F D L++   P+K
Sbjct: 113 VNAAENDIGSFKDRLLLRHEPHK 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,814
Number of Sequences: 5004
Number of extensions: 45983
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)