Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0045
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0650 + 24728700-24728725,24729582-24729660,24729802-247298...    29   2.6  

>02_04_0650 +
           24728700-24728725,24729582-24729660,24729802-24729889,
           24730216-24730297,24731083-24731278,24731432-24731816,
           24733332-24734428,24734621-24734886,24735565-24735631,
           24735722-24735772,24736033-24736123,24736239-24736345
          Length = 844

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 618 KCPTKGGLRNDEDDTSVLISVGLPRKSVYIFF 523
           K P   GLRN  +   +L+  G  +K +YIFF
Sbjct: 11  KVPGSTGLRNGVEKRGMLLVRGFYKKGIYIFF 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,518,832
Number of Sequences: 37544
Number of extensions: 228094
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)