Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0045
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.5  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   4.7  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 433 ISRGDINLLIVLIFT*FLNIVFLLKVKAKYYNNFFLEDFVTS 308
           +SRG + L IVLI+T    I + L      +  F  E F+TS
Sbjct: 157 LSRGQVILFIVLIWT--YTIPWALMPVMGVWGRFVPEGFLTS 196



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 158 LFVRTTICNQYYLSLSKIINILNKIYSKNINHLK 57
           +FV T     Y + +  II   ++I S  +NH K
Sbjct: 210 IFVATIFTFSYCIPMILIIYYYSQIVSHVVNHEK 243


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 126 LFISVKNN*HFKQNLFEKYKS 64
           L +  K+  HF ++++EKYK+
Sbjct: 49  LILVKKSTAHFVKDIYEKYKN 69


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 459 SIALIMYHKNAKSSIRREQQWGKICKRIFWEDQRKLEQTYRPHRS 593
           S A +  H   K + R+E+    IC+R++      +   Y  H+S
Sbjct: 17  SKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKS 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,930
Number of Sequences: 438
Number of extensions: 3443
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)