Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0044
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    33   0.039
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   4.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.9  

>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -3

Query: 441 INSDAYFFFLLIRNFAT---ENFLDSLMFCIDKLIAFFNYFLHNGLVDFCRLSFLFGKLF 271
           I S  +F  +   NF     +  L   +F I  LI+F  +FL    + F  LSF+    F
Sbjct: 143 IKSHVHFHLIPFINFFLLYHQIILSHSLFHISHLISF--HFLFFSFLSFPLLSFILFPCF 200

Query: 270 LQLFCSFNTFFLFSPFA 220
             LF S N+F L SPF+
Sbjct: 201 -SLFLSSNSFSLASPFS 216


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 387 NFLDSLMFCIDKLIAFFNYFLHNGLVDFC 301
           +F D L+ CI K +  FNY L     D C
Sbjct: 451 SFRDGLLQCIFKSLGVFNYELKEDNDDLC 479


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 400 VSDEKKKEIGIRINILQTFHLYDKQPNIPTKEDL 501
           +SD K +++  ++N L   +   K+ NI  KE+L
Sbjct: 141 ISDIKLEQLSAKLNELHQIYRLRKEKNIEIKEEL 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,308
Number of Sequences: 5004
Number of extensions: 52106
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)