Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0044
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383...    41   8e-04
09_03_0001 - 11373469-11373862,11374072-11374264,11374414-113744...    31   0.66 
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561...    29   4.7  
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966...    29   4.7  
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19...    28   6.2  

>01_03_0161 +
           13337265-13337297,13337880-13338017,13338211-13338308,
           13338395-13338450,13338664-13338781,13338889-13338916,
           13339021-13339112,13339321-13339477,13339569-13339693,
           13339785-13339884,13339991-13340059
          Length = 337

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +1

Query: 307 IYKTIMEKIIEKGDQFINTEHERVKKILSGKVSDEKKKEIGIRINILQTF 456
           +Y  I +KI++KG  +   E ER++++L   +S  K  E  I+ N+L TF
Sbjct: 286 VYIAIAKKILDKGHDYTKKETERLERMLEKSISPSKADEFIIKKNVLSTF 335


>09_03_0001 -
           11373469-11373862,11374072-11374264,11374414-11374482,
           11374858-11374984,11375223-11375485,11375697-11375785,
           11375832-11375909,11376070-11376141,11376234-11376372,
           11378857-11379323,11380781-11381345,11382553-11382622
          Length = 841

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
 Frame = +2

Query: 83  DPIPFDDSQGFTTDELRRFVRE------NTGLYLSLPGCVRNLDKLAIKFMKAKGEN-RK 241
           DP+   +S+ FT +EL++F           G      GC+ N  ++A+K +    EN   
Sbjct: 517 DPLQITESRQFTYEELKKFTNNFQQFIGRGGFGNVYYGCLENKTEVAVKMLSEFSENGLD 576

Query: 242 KVLKEQKSCRKSFPKRKLSL 301
           + L E +S  K   K  +SL
Sbjct: 577 QFLAEVQSLTKVHHKNLVSL 596


>12_02_1286 -
           27555143-27555191,27555290-27555511,27555911-27556162,
           27556683-27557062,27557202-27557311,27557864-27558033,
           27558236-27558444,27558528-27558617,27559125-27559264,
           27559356-27559463,27559626-27559716,27560736-27560852,
           27561497-27561767,27561892-27562193,27562400-27562469,
           27563464-27563702,27564613-27564846,27564943-27565179,
           27565276-27565734
          Length = 1249

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 215 MKAKGENRKKVLKEQKSCRKSFPKRKLSLQKSTRPLWRK*LKKAIN 352
           + AK + +   LK+   C KS  K+KL L K    L R  LK+ I+
Sbjct: 279 LSAKKKEQSGFLKKMTLCEKSIAKKKLELDKKQPELLR--LKEQIS 322


>05_06_0166 +
           26093618-26095381,26095820-26096039,26096345-26096674,
           26097481-26098029,26098366-26098426,26099737-26099824,
           26100240-26100299
          Length = 1023

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 325 EKIIEKGDQFINTEHERVKKILSGKVS 405
           E I+ +G + +N EH R   I+ GKVS
Sbjct: 913 ENIVLQGREVVNNEHGRQNSIVRGKVS 939


>01_01_0025 +
           188915-189132,190625-190705,191350-191506,191958-192161,
           192248-192356,192401-192496,192724-193994,194200-194384,
           194619-195055,197034-197077,197830-199036,199253-199479
          Length = 1411

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 185 RNLDKLAIKFMKAKGENRKKVLKEQKSCRKSFPKRKLSLQKSTR 316
           R L K  ++F + +GE RKK + E     +   +RK  + +STR
Sbjct: 36  RRLSKEMLEFSEPRGEGRKKGIPEMSQTAR---RRKREVARSTR 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,176,653
Number of Sequences: 37544
Number of extensions: 267826
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)