Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0044
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)                 49   3e-06
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)                 47   1e-05
SB_42630| Best HMM Match : Ets (HMM E-Value=0)                         30   2.1  
SB_7514| Best HMM Match : OATP (HMM E-Value=0)                         30   2.1  
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       29   3.6  
SB_25384| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_25564| Best HMM Match : RVT_1 (HMM E-Value=0.049)                   29   3.6  
SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)                 28   8.3  

>SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)
          Length = 83

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 24/50 (48%), Positives = 35/50 (70%)
 Frame = +1

Query: 307 IYKTIMEKIIEKGDQFINTEHERVKKILSGKVSDEKKKEIGIRINILQTF 456
           +Y  IM+KI EKG  +I+TE  RVKK+L  K+++ KKK    R++IL +F
Sbjct: 24  MYVKIMKKIQEKGTGYIDTEITRVKKLLKDKLTENKKKAFHDRLDILTSF 73


>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 295

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/49 (40%), Positives = 32/49 (65%)
 Frame = +1

Query: 310 YKTIMEKIIEKGDQFINTEHERVKKILSGKVSDEKKKEIGIRINILQTF 456
           Y  +ME++  KGD FI TE  R++++L G++S  KK +  +R N+L  F
Sbjct: 237 YVKVMERVQSKGDSFIQTETSRLERLLEGQISAGKKDQFIMRKNVLSQF 285


>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
          Length = 631

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 210 LIASLSKFLTQPGKLRYKPVFSRTNRRSSS 121
           L++S     T PG+L Y P  S T+RRSSS
Sbjct: 80  LVSSPLPSPTSPGELPYLPTLSPTSRRSSS 109


>SB_7514| Best HMM Match : OATP (HMM E-Value=0)
          Length = 763

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -3

Query: 456 ECL*DINSDAYFFFLLIRNFATENFLDSLMFCIDKLIAFFNYFLHNGLVDFCRLSFLFGK 277
           ECL  +NS  +F F L+  F T++ + + ++ +        Y   + L  F   SF    
Sbjct: 22  ECLKFLNSPKWFLFFLVMYFFTQSIVVNGVYSVSISTIEKRYGYSSSLTGFLTSSFDIAA 81

Query: 276 LFLQLFCSF 250
           L L    SF
Sbjct: 82  LVLTPLVSF 90


>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 977

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 210 LIASLSKFLTQPGKLRYKPVFSRTNRRSSS 121
           L++S     T PG+L Y P  S T+RRSSS
Sbjct: 426 LVSSPLPSPTSPGELPYLPTLSPTSRRSSS 455


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +2

Query: 197  KLAIKFMKAKGEN--RKKVLKEQKSCRKSFPKRKLSLQKSTRPLWRK*LKKAINLSIQNM 370
            +L +   KA  E    K + +E+K   +  PK++   ++  +PL +K L +   L +   
Sbjct: 6084 ELTVSAEKAVEEKPLEKPITREEKKVEEVKPKKEKPTEREAKPLDKKPLVEEKELPVSAK 6143

Query: 371  RESRKFSVAKFLMRRKKK 424
            +   +  + K + R++KK
Sbjct: 6144 KAVEEKPLGKPITRKEKK 6161



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +2

Query: 239  KKVLKEQKSCRKSFPKRKLSLQKSTRPLWRK*LKKAINLSIQNMRESRKFSVAKFLMRRK 418
            K + +++K   +  PK++   ++  +PL  K L K   L++   +   +  + K + R++
Sbjct: 5558 KPIARKEKKVEEVQPKKEKPTEREAKPLEEKPLVKEKELAVSAEKAVEEKPLEKPITRKE 5617

Query: 419  KK 424
            KK
Sbjct: 5618 KK 5619


>SB_25384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 340 KGDQFINTEHERVKKILSGKVSDEKKKEIGIRINILQTFHL 462
           K  QFI  + ER++  L GK  +    E G RI+ L   HL
Sbjct: 4   KSCQFIRAQLERIRDALDGKNLESVLTEFGTRIHRLLFEHL 44


>SB_25564| Best HMM Match : RVT_1 (HMM E-Value=0.049)
          Length = 588

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 236 RKKVLKEQKSCRKSFPKRKL-SLQKSTRPLWRK*LKKAINLSIQN 367
           RKKV +  KSC+++F +RK+ +L++S    W K +K     S +N
Sbjct: 124 RKKVQRLIKSCKRTFYERKVEALKESNISRWWKEVKALSGGSCRN 168


>SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)
          Length = 1102

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +1

Query: 325 EKIIEKGDQFINT---EHERVKKILSGKVSDEKKKEIGIR 435
           +K++E+ ++ I     + E +K++L GKV +  +K+ GIR
Sbjct: 224 DKLVEEKEKIITAIAAKLESLKELLEGKVREVSEKDAGIR 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,444,351
Number of Sequences: 59808
Number of extensions: 332684
Number of successful extensions: 928
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)