Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0044
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110482-5|CAB60338.2| 704|Caenorhabditis elegans Hypothetical ... 33 0.19
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 32 0.34
Z81134-5|CAB54316.1| 101|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z75538-2|CAA99840.1| 476|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z92972-4|CAB07489.2| 337|Caenorhabditis elegans Hypothetical pr... 30 1.4
AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical ... 29 2.4
AF024503-12|AAG24092.2| 329|Caenorhabditis elegans Serpentine r... 29 3.2
U41533-1|AAA83162.2| 357|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF067945-13|AAC17676.2| 308|Caenorhabditis elegans Serpentine r... 29 4.2
AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical ... 28 5.5
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 28 7.3
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 28 7.3
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 28 7.3
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 28 7.3
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 28 7.3
U97007-2|AAB52298.2| 271|Caenorhabditis elegans Hypothetical pr... 27 9.7
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 27 9.7
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 27 9.7
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical... 27 9.7
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 27 9.7
AF039047-3|AAB94222.1| 748|Caenorhabditis elegans Carnitine pal... 27 9.7
AF016438-12|AAK84532.1| 407|Caenorhabditis elegans Nuclear horm... 27 9.7
AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical ... 27 9.7
AC006679-5|AAK84468.2| 388|Caenorhabditis elegans Hypothetical ... 27 9.7
>AL110482-5|CAB60338.2| 704|Caenorhabditis elegans Hypothetical
protein Y39G8B.5 protein.
Length = 704
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 140 VRENTGLYLSLPGCVRNLDKLAIKFMKAK-GENRKKVLKEQKSCRKSFPKRKLSLQK 307
+++N YL GC RN + ++ ++ + EN+ ++ K KSCRK + L++
Sbjct: 633 MKDNVNRYLQAQGCSRNTMEKSMHLLRPEFHENQIRMKKSTKSCRKLIDQLNKELEQ 689
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +1
Query: 328 KIIEKGDQFINTEHERVKKILSGKVSDE--KKKEIGI 432
K +EK F+NT HE KK+ G + D+ KKK+IGI
Sbjct: 154 KHVEKA--FVNTAHEIYKKLKLGVIEDDDVKKKKIGI 188
>Z81134-5|CAB54316.1| 101|Caenorhabditis elegans Hypothetical
protein T28D6.9 protein.
Length = 101
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3
Query: 312 VDFCRLSFLFGKLFLQLFCSFNTFFLFS 229
VD C+ FL G FL L NTF+ FS
Sbjct: 12 VDLCKKYFLIGACFLPLVWIVNTFWFFS 39
>Z75538-2|CAA99840.1| 476|Caenorhabditis elegans Hypothetical
protein F20G4.2 protein.
Length = 476
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +2
Query: 50 PVVRLFXKGKNDPIPFDDSQGFTT--DELRRFVRENTGLYLSLPGCVRNLDKLAIKFMKA 223
P+ + GKN P FDD + + +E F N L S + +K+ +F
Sbjct: 229 PICFDYCNGKNSPDLFDDVEDPMSIYEESEAFEVANCNLEASPFKIEVSPEKIGSQF--- 285
Query: 224 KGENRKKVLKEQKSCRKSFPKRKLSLQKSTRPLW 325
+ E ++V K +C K P++KL + P W
Sbjct: 286 RFEEFEEVEKLNVNCLKKSPEKKLRFAEPDEPTW 319
>Z92972-4|CAB07489.2| 337|Caenorhabditis elegans Hypothetical
protein T19C9.4 protein.
Length = 337
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 297 LSFLFGKLFLQLFCSFNTFFLFSP 226
L+ LFG L FCSF+T F F P
Sbjct: 68 LNHLFGGLLDVCFCSFSTLFFFEP 91
>AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical
protein Y92H12A.4 protein.
Length = 782
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 218 KAKGENRKKVLKEQKSCRK-SFPKRKLSLQKSTRPLWRK*LKKAI 349
KA + + L EQKS K SF KLS +T + ++ LKKAI
Sbjct: 508 KAIKSSSEPALSEQKSTEKPSFSTEKLSSDSATTKIEKEKLKKAI 552
>AF024503-12|AAG24092.2| 329|Caenorhabditis elegans Serpentine
receptor, class u protein25 protein.
Length = 329
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -3
Query: 384 FLDSLMFCIDKLIAFFNYFLHNGLVDFCRLSFLFGKLFLQLFCSFNTFFLFSPFAFINLI 205
F MF + +YFL +G + LFG + FNTFF FS INLI
Sbjct: 166 FFTFFMFTGSGYCTYMDYFLSSGALVMRITETLFG-ITNTYPLMFNTFFWFSTSFTINLI 224
>U41533-1|AAA83162.2| 357|Caenorhabditis elegans Hypothetical
protein R05F9.7 protein.
Length = 357
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 378 DSLMFCIDK-LIAFFNYFLHNGLVDFCRLSFLFGKLFLQLFCSFNTFFLFSPFAFINLIA 202
+S++ C+ L+ +FNYF+ + + L + LF F T ++F A +I
Sbjct: 54 ESILICVGMFLMVYFNYFVKSFQIVHLNLQY--------LFLLFTTLYIFGSLARFYMIL 105
Query: 201 SLSKFLT 181
KF+T
Sbjct: 106 VQLKFVT 112
>AF067945-13|AAC17676.2| 308|Caenorhabditis elegans Serpentine
receptor, class x protein59 protein.
Length = 308
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 258 CSFNTFFLFSPFAFINLIASLSKFLTQPGKLRYKPVFSRTNRR 130
C F F + I+L+ SL++F RYK +FS N +
Sbjct: 81 CGFILLFSYELSVQIHLVISLNRFFAVWTPYRYKTMFSERNTK 123
>AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical
protein F54E2.5 protein.
Length = 710
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 339 FNYFLHNGLVDFCRLSFLFGKLFLQLF-CSFNTFFL 235
F++ H L+DFC S LF L + + C F FL
Sbjct: 480 FSFISH--LIDFCHYSILFSNLVIAIHPCQFPAVFL 513
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 62 LFXKGKNDPIPFDDSQGFTTDELRRF 139
LF G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 62 LFXKGKNDPIPFDDSQGFTTDELRRF 139
LF G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 62 LFXKGKNDPIPFDDSQGFTTDELRRF 139
LF G N +PF+ ++ FTT + R F
Sbjct: 379 LFVSGNNGQVPFEFTEHFTTKQKRPF 404
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 62 LFXKGKNDPIPFDDSQGFTTDELRRF 139
LF G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 62 LFXKGKNDPIPFDDSQGFTTDELRRF 139
LF G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>U97007-2|AAB52298.2| 271|Caenorhabditis elegans Hypothetical
protein ZC196.8 protein.
Length = 271
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 354 KLIAFFNYFLHNGLVDFCRLSFLFGKLFLQLFCSFNTFFL 235
+L FF+Y L+DFC S LF L + + +F FFL
Sbjct: 41 QLFYFFSY-----LIDFCHYSILFSNLVISIQRAF-VFFL 74
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +2
Query: 236 RKKVLKEQKSCRKSFPKRKLSLQKSTRPLWRK*LKK----AINLSIQNMRESRKFSVAKF 403
RK+ +E+ KS K+K Q+ + L RK ++K I + +Q RE R+ KF
Sbjct: 505 RKREEREKSKTIKSSTKKKKKAQEVLKMLKRKLIRKRKRRRIQIKLQMYREQRREHKRKF 564
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +1
Query: 145 RKHRLVSKFTGLREK-LRQTSY*IYESKRREQKKSVKRTEELQXXXXXXXXXXXXIYKTI 321
R +++ K TG R K +T + + R + K+ + ++++ I K
Sbjct: 410 RDQKILKKGTGERNKEFTETIATLRDKLRASETKNAQYRQDIRVRDEKLKKKDEEIEK-- 467
Query: 322 MEKIIEKGDQFINTEHERVKKILSGKVSDEKKKEIGIRI 438
++K + + T +RVK++ + K D+K+KE+ ++
Sbjct: 468 LQKDGNRLKSTLQTLEKRVKQLRTEKERDDKEKEMFAKV 506
>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
protein Y67A10A.3 protein.
Length = 1237
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 149 NTGLYLSLPGCVRNLDKLAIKFMKAKGENRKKVLKEQKSCRKSFPKRKLSLQKSTRPL 322
+TG +PG +R L+KL F+ A + K K QK+ ++ + LS+ +R L
Sbjct: 526 DTGALQEIPGILRLLEKLKNDFVAAVEQVNTK--KTQKAKQRRAAQNNLSVSPISRSL 581
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +1
Query: 145 RKHRLVSKFTGLREK-LRQTSY*IYESKRREQKKSVKRTEELQXXXXXXXXXXXXIYKTI 321
R +++ K TG R K +T + + R + K+ + ++++ I K
Sbjct: 410 RDQKILKKGTGERNKEFTETIATLRDKLRASETKNAQYRQDIRVRDEKLKKKDEEIEK-- 467
Query: 322 MEKIIEKGDQFINTEHERVKKILSGKVSDEKKKEIGIRI 438
++K + + T +RVK++ + K D+K+KE+ ++
Sbjct: 468 LQKDGNRLKSTLQTLEKRVKQLRTEKERDDKEKEMFAKV 506
>AF039047-3|AAB94222.1| 748|Caenorhabditis elegans Carnitine
palmitoyl transferaseprotein 4 protein.
Length = 748
Score = 27.5 bits (58), Expect = 9.7
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Frame = +2
Query: 2 GTRVLAKKYGATKDNFPV--VRLFXKGKNDPIPFDDSQG--FTTDELRRFVRENTGLYLS 169
G R+ K+Y + + N P V L + DS G +T D+L + V E G
Sbjct: 279 GCRIPGKQYDSFQWNKPAKHVILVHDCTWYKVDICDSNGQLYTVDQLAKIVAEVMGRDDK 338
Query: 170 LPGCVRNLDKLAIKFMKAKGENRKKVLKEQKSCRK 274
G +RN+ L NR+K E K +K
Sbjct: 339 SKGYLRNIASLTTDRRTEWCSNRQKFFLENKHNQK 373
>AF016438-12|AAK84532.1| 407|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 134 protein.
Length = 407
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Frame = -2
Query: 103 VIKWYWIIFTFXEE-----SHYRKIIFGSSVLLC 17
++K WI +T E+ H RK IFG SV++C
Sbjct: 224 ILKSAWISWTRLEKLAETADHQRKKIFGDSVMMC 257
>AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical
protein T21G5.2 protein.
Length = 109
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 291 FLFGKLFLQLFCSFNTFFLFSPFAFINLIASLSKFLTQPGKLRYKPVFSRTNRRSSSVVK 112
F + +F L FN +FLF + +I S S+F+ LR + R R +S +K
Sbjct: 39 FTYIHIFSYLCVLFN-YFLFIDLSISTVIVSFSRFIKFQTNLRQLSNYCRNERFFTSFLK 97
>AC006679-5|AAK84468.2| 388|Caenorhabditis elegans Hypothetical
protein R13A5.7 protein.
Length = 388
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 487 WVCLVVCHISGMF-VRY*FGCLFLFSSHQK 401
WV + VCHI+ F + Y GC L SH K
Sbjct: 90 WVLVTVCHITLKFTLDYEAGCTTLKCSHLK 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,332,803
Number of Sequences: 27780
Number of extensions: 282883
Number of successful extensions: 928
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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