Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0044
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    29   0.042
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    29   0.042
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    29   0.042
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.4  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 29.1 bits (62), Expect = 0.042
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
 Frame = +2

Query: 221 AKGENRKKVLKEQKSCRKSFPKRKLSLQKSTRPLWRK*LKKAINLSIQNMRESRKF-SVA 397
           ++  NR+   K+++  +    K KL  ++++R  + +  ++  N S +N RE RK+   +
Sbjct: 5   SRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQN-SYKNEREYRKYRETS 63

Query: 398 KFLMR----RKKK*ASELISYKHSTYMTNNQTYPQKKTCDKY 511
           K   R    R+K    ++IS   + Y  NN  Y +K  C+ Y
Sbjct: 64  KERSRDRKEREKSKEHKIISSLSNNYNYNNNNY-KKLYCNNY 104


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 29.1 bits (62), Expect = 0.042
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
 Frame = +2

Query: 221 AKGENRKKVLKEQKSCRKSFPKRKLSLQKSTRPLWRK*LKKAINLSIQNMRESRKF-SVA 397
           ++  NR+   K+++  +    K KL  ++++R  + +  ++  N S +N RE RK+   +
Sbjct: 5   SRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQN-SYKNEREYRKYRETS 63

Query: 398 KFLMR----RKKK*ASELISYKHSTYMTNNQTYPQKKTCDKY 511
           K   R    R+K    ++IS   + Y  NN  Y +K  C+ Y
Sbjct: 64  KERSRDRKEREKSKEHKIISSLSNNYNYNNNNY-KKLYCNNY 104


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 29.1 bits (62), Expect = 0.042
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
 Frame = +2

Query: 221 AKGENRKKVLKEQKSCRKSFPKRKLSLQKSTRPLWRK*LKKAINLSIQNMRESRKF-SVA 397
           ++  NR+   K+++  +    K KL  ++++R  + +  ++  N S +N RE RK+   +
Sbjct: 5   SRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQN-SYKNEREYRKYRETS 63

Query: 398 KFLMR----RKKK*ASELISYKHSTYMTNNQTYPQKKTCDKY 511
           K   R    R+K    ++IS   + Y  NN  Y +K  C+ Y
Sbjct: 64  KERSRDRKEREKSKEHKIISSLSNNYNYNNNNY-KKLYCNNY 104


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 23  KYGATKDNFPVVRLFXKGKNDPIPFD 100
           KY +    FP   L  KGK + +P++
Sbjct: 590 KYSSQPYGFPERLLLPKGKKEGMPYN 615


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 23  KYGATKDNFPVVRLFXKGKNDPIPFD 100
           KY +    FP   L  KGK + +P++
Sbjct: 590 KYSSQPYGFPERLLLPKGKKEGMPYN 615


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 482 MFGCLSYKWNVCKILIRMPISFFFSSETLPLRIFLTLSCSVL 357
           +F  L  +W +    I+MP    F  ++L L  F  +  S+L
Sbjct: 286 LFCLLDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLMLTSIL 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,682
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)