Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0044
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47470.1 68415.m05925 thioredoxin family protein similar to p... 44 1e-04
At4g15890.1 68417.m02415 expressed protein 32 0.32
At3g02930.1 68416.m00288 expressed protein ; expression support... 31 0.96
At2g35510.1 68415.m04349 WWE domain-containing protein contains ... 29 2.2
At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family pr... 29 2.9
At3g55130.1 68416.m06122 ABC transporter family protein breast c... 29 3.9
At3g22410.1 68416.m02827 expressed protein 29 3.9
At5g37350.2 68418.m04487 RIO1 family protein similar to extragen... 28 5.1
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 28 5.1
At5g63550.1 68418.m07976 expressed protein 28 6.8
At5g04885.1 68418.m00512 glycosyl hydrolase family 3 protein con... 28 6.8
>At2g47470.1 68415.m05925 thioredoxin family protein similar to
protein disulfide isomerase [Dictyostelium discoideum]
GI:2627440; contains Pfam profile: PF00085 Thioredoxin
Length = 361
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/103 (28%), Positives = 47/103 (45%)
Frame = +1
Query: 148 KHRLVSKFTGLREKLRQTSY*IYESKRREQKKSVKRTEELQXXXXXXXXXXXXIYKTIME 327
K +L SK G+ E L + + E+K + R EE +Y + +
Sbjct: 256 KGQLTSK-AGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAK 314
Query: 328 KIIEKGDQFINTEHERVKKILSGKVSDEKKKEIGIRINILQTF 456
IEKG + + E ER+ ++L +S K E+ ++ NIL TF
Sbjct: 315 SYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357
>At4g15890.1 68417.m02415 expressed protein
Length = 1314
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 312 VDFCRLSFLFGKLFLQLFCSFN--TFFLFSPFAFINLIASLSKFL 184
V+ RL+ L +L L S N F FSP AF++L+ S+ ++L
Sbjct: 68 VESGRLAILASDAYLSLLLSTNCPVFTFFSPIAFLSLLGSIRRYL 112
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 30.7 bits (66), Expect = 0.96
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +1
Query: 217 ESKRREQKKSVKRTEELQXXXXXXXXXXXXIYKTIMEKIIEKGDQFINTEHERVKKILSG 396
ES + E++KS K E L + + EK++ +GDQ T+ E +K ++
Sbjct: 442 ESSKEEEEKSKKAMESLASALHEVSSES----RELKEKLLSRGDQNYETQIEDLKLVIKA 497
Query: 397 ------KVSDEKKKEIGIRINILQ 450
+ DE + EI + +N ++
Sbjct: 498 TNNKYENMLDEARHEIDVLVNAVE 521
>At2g35510.1 68415.m04349 WWE domain-containing protein contains
Pfam domain, PF02825: WWE domain
Length = 568
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/73 (26%), Positives = 30/73 (41%)
Frame = +2
Query: 11 VLAKKYGATKDNFPVVRLFXKGKNDPIPFDDSQGFTTDELRRFVRENTGLYLSLPGCVRN 190
V+ + G D+F V+ G ND D D + ++ + T + +
Sbjct: 209 VVTDESGDNMDDFQAVQRSSNGPNDEASEDSCSRELDDAVEKWDKTETDRFSGVKPAEEE 268
Query: 191 LDKLAIKFMKAKG 229
LDK A+K M A G
Sbjct: 269 LDKDAVKQMFALG 281
>At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family
protein
Length = 253
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +1
Query: 313 KTIMEKIIEKGDQFINTEHERVKKILSGKVSDEKKKEIGIRINILQTFHLYDKQ 474
K + + + K ++I ++VK+++ +KK+EI +R++ + F LYDKQ
Sbjct: 106 KLSIPETVSKSLKYIPELQQQVKRLI------QKKEEILVRVSGQRDFELYDKQ 153
>At3g55130.1 68416.m06122 ABC transporter family protein breast
cancer resistance protein 1 BCRP1, Mus musculus,
EMBL:NP_036050
Length = 725
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 505 ITGLLLWVCLVVCHISGMFVRY*FGCLFLFSSHQK 401
IT L W CL + SG+F R F LF S K
Sbjct: 689 ITQLSKWDCLWITFASGLFFRILFYFALLFGSRNK 723
>At3g22410.1 68416.m02827 expressed protein
Length = 400
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 209 KFMKAKGENRKKVLKEQKSC---RKSFPKRKLSLQKSTRPL 322
+F+K KG+N KK K+ SC R++F +L ++ + L
Sbjct: 36 RFLKVKGDNVKKAAKQLSSCLSWRQNFDIERLGAEEFSTEL 76
>At5g37350.2 68418.m04487 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 385
Score = 28.3 bits (60), Expect = 5.1
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +2
Query: 146 ENTG--LYLSLPGCVRNLDKLAIKFMKAKGENRKKVLKEQKSCRKSFPKRKLSLQKSTRP 319
++TG LY ++ G L K+ + ++ E ++ +E+ S +S + + L +
Sbjct: 287 QDTGDMLYQTITGLKDALPKVDEQQIEVNAEEEEEE-EEEGSGEESEEESEKELGPEDKK 345
Query: 320 LWRK*LKKAINLSIQNMRESRKFSVAKFLMRRKKK 424
RK KK + + RESRK K + +RKKK
Sbjct: 346 AARKEHKKKVK---EEKRESRKTKTPKSVKKRKKK 377
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 28.3 bits (60), Expect = 5.1
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +2
Query: 146 ENTG--LYLSLPGCVRNLDKLAIKFMKAKGENRKKVLKEQKSCRKSFPKRKLSLQKSTRP 319
++TG LY ++ G L K+ + ++ E ++ +E+ S +S + + L +
Sbjct: 433 QDTGDMLYQTITGLKDALPKVDEQQIEVNAEEEEEE-EEEGSGEESEEESEKELGPEDKK 491
Query: 320 LWRK*LKKAINLSIQNMRESRKFSVAKFLMRRKKK 424
RK KK + + RESRK K + +RKKK
Sbjct: 492 AARKEHKKKVK---EEKRESRKTKTPKSVKKRKKK 523
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +2
Query: 194 DKLAIK---FMKAKGENRKKVLKEQKSC--RKSFPKRKLSLQKSTRPLWRK 331
++LA+K F+++ E R ++ +Q+ RKS PKR S + S P RK
Sbjct: 226 EELAVKVLEFLESPKETRDVIIADQEKAKKRKSTPKRGKSGESSDTPAKRK 276
>At5g04885.1 68418.m00512 glycosyl hydrolase family 3 protein
contains Pfam profiles PF00933: Glycosyl hydrolase
family 3 N terminal domain, PF01915: Glycosyl hydrolase
family 3 C terminal domain
Length = 665
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 514 SILITGLLLWVCL-VVCHISGMFVRY 440
S+ I G+LLW+C+ V C+ G ++ Y
Sbjct: 5 SVRIVGVLLWMCMWVCCYGDGEYLLY 30
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,302,818
Number of Sequences: 28952
Number of extensions: 252549
Number of successful extensions: 743
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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