Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0043
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81122-4|CAB03355.1|  233|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory recep...    29   2.4  
U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant respons...    29   2.4  
AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm rece...    28   5.5  

>Z81122-4|CAB03355.1|  233|Caenorhabditis elegans Hypothetical
           protein T13F2.4 protein.
          Length = 233

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 221 VLSMSVFFNIFVISDQWSKILEYSLRCV*K 132
           +L + +F   +VIS  WSKI + S+ CV K
Sbjct: 1   MLVVFLFIRFYVISPSWSKIQKISMMCVQK 30


>U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory receptor
           Odr-10 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 236 MFYTFENSFRHFQRQ*QLYCFLYYFQLHTT 325
           ++Y +EN  RH   +  L CF++YF +  T
Sbjct: 186 VYYQYENGVRHIYLKNLLGCFVHYFVMSMT 215


>U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant response
           abnormal protein10 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 236 MFYTFENSFRHFQRQ*QLYCFLYYFQLHTT 325
           ++Y +EN  RH   +  L CF++YF +  T
Sbjct: 186 VYYQYENGVRHIYLKNLLGCFVHYFVMSMT 215


>AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 112 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 236 MFYTFENSFRHFQRQ*QLYCFLYYFQLHTT 325
           ++Y +EN  RH   +  L CF++YF +  T
Sbjct: 186 VYYQYENGERHIYIKNLLGCFVHYFVMSMT 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,744
Number of Sequences: 27780
Number of extensions: 252585
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)