Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0042
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 110 2e-25
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 76 4e-15
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 74 2e-14
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 67 3e-12
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 66 5e-12
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 63 3e-11
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 62 7e-11
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 52 8e-08
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 34 0.022
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 4.5
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 5.9
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 7.8
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 7.8
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 7.8
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 25 7.8
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 110 bits (265), Expect = 2e-25
Identities = 51/77 (66%), Positives = 62/77 (80%)
Frame = +1
Query: 37 QPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDG 216
Q +++L+EGTD +QG+ QL+SNINAC V D +RTTLGP G DKL+VD G+ VISNDG
Sbjct: 7 QIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 217 ATIMKLLDIIHPALKLL 267
ATIMKLLDI+HPA K L
Sbjct: 67 ATIMKLLDIVHPAAKTL 83
Score = 107 bits (256), Expect = 2e-24
Identities = 51/87 (58%), Positives = 66/87 (75%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P AKTLVDIA++QDAEVGDGTTSVV+ AGE+L+ + FVE+GV ++IR R A++LA+
Sbjct: 78 PAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAV 137
Query: 429 EKIKEQAVKIDNKSPEEQRDLLLKCAS 509
KIKE A+ +D + RDLL KCAS
Sbjct: 138 NKIKEIAIHLDLSDEGKLRDLLTKCAS 164
Score = 67.7 bits (158), Expect = 1e-12
Identities = 41/74 (55%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +2
Query: 476 GTKRSPIEVCI-TAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALED 652
G R + C TAM+SKLI F+K+VVDAVL+LD L +MIGIKKVPGGA+ED
Sbjct: 153 GKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLNENMIGIKKVPGGAMED 212
Query: 653 SFPGFPEWAFKKTF 694
S AFKKTF
Sbjct: 213 SLL-VKGVAFKKTF 225
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 76.2 bits (179), Expect = 4e-15
Identities = 36/67 (53%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Frame = +1
Query: 73 QTQGKPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDII 246
Q + KPQ V SNI A + V DA+RT+LGP+GMDK+I G+ +++NDGATI+K L ++
Sbjct: 12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVL 71
Query: 247 HPALKLL 267
HPA K+L
Sbjct: 72 HPAAKML 78
Score = 69.7 bits (163), Expect = 4e-13
Identities = 31/71 (43%), Positives = 49/71 (69%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P AK LVD++ +QD E GDGTTSVVILAG +L + +++G+HP V+ + + A+ +
Sbjct: 73 PAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTV 132
Query: 429 EKIKEQAVKID 461
+ +KE A+ I+
Sbjct: 133 DCMKENALAIE 143
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 73.7 bits (173), Expect = 2e-14
Identities = 35/85 (41%), Positives = 54/85 (63%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P AK+++++A++QD EVGDGTTSV+ILAGEIL P ++ +HP V+IR+ + A A+
Sbjct: 73 PAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDAL 132
Query: 429 EKIKEQAVKIDNKSPEEQRDLLLKC 503
I E + ++ E L+ C
Sbjct: 133 SIIDEITLPVNVDDNAEMFRLIRTC 157
Score = 62.9 bits (146), Expect = 4e-11
Identities = 27/76 (35%), Positives = 46/76 (60%)
Frame = +1
Query: 34 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 213
MQ + ++ ++ G +SNI A + V D +RT LGPR M K+++D G +++ND
Sbjct: 1 MQSPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTND 60
Query: 214 GATIMKLLDIIHPALK 261
G I++ +++ HPA K
Sbjct: 61 GHAILREIEVAHPAAK 76
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 66.9 bits (156), Expect = 3e-12
Identities = 34/72 (47%), Positives = 49/72 (68%)
Frame = +3
Query: 255 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 434
AK LV+I+K QD EVGDGTTSV + A E+L++ + V +HP+V+I R A++ AI+
Sbjct: 77 AKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDA 136
Query: 435 IKEQAVKIDNKS 470
++ A IDN S
Sbjct: 137 LR--ASSIDNSS 146
Score = 52.4 bits (120), Expect = 6e-08
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +1
Query: 52 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDH-NGKAVISNDGATIM 228
+ E Q +G+ +S+ V D V++TLGP+GMDK++ + +G V++NDGATI+
Sbjct: 8 IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67
Query: 229 KLLDIIHPALKLL 267
K + + + A K+L
Sbjct: 68 KSIALDNAAAKVL 80
Score = 49.2 bits (112), Expect = 6e-07
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +2
Query: 485 RSPIE-VCITAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSF 658
RS +E + T +SSK++ Q K+HF+++ VDAVL L LD I I K+ GG L+DSF
Sbjct: 152 RSDLENIARTTLSSKILSQNKNHFAQLAVDAVLRLKGS-TNLDNIQIIKILGGKLDDSF 209
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 66.1 bits (154), Expect = 5e-12
Identities = 30/61 (49%), Positives = 41/61 (67%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P K LV++A+ QD EVGDGTTSVVI+A E+L+R V+ +HP +I R A R A+
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 429 E 431
+
Sbjct: 135 K 135
Score = 62.1 bits (144), Expect = 7e-11
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = +1
Query: 70 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIH 249
++ G+ N+ A + + V+++LGP G+DK++VD G ++NDGATI+ LLD+ H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 250 PALKLL 267
PA K+L
Sbjct: 75 PAGKVL 80
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 482 KRSPIEVCITAMSSKLIHQQKDHFSKIVVDAVLSLDT 592
K S I V T+MSSK+I D FS + VDA+LS+ T
Sbjct: 150 KESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKT 186
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +1
Query: 52 LLREGTDQTQG-KPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIM 228
L REG QG + ++ N NA + + + RT+LGP G +K++V+H + ++ND ATI+
Sbjct: 13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72
Query: 229 KLLDIIHPALKLL 267
+ L++IHPA KL+
Sbjct: 73 RELEVIHPAAKLV 85
Score = 44.4 bits (100), Expect = 2e-05
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P AK +VD + Q+ E+GD VV+ GE+L + + + G+ P + + A +
Sbjct: 80 PAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTM 139
Query: 429 EKIKE-QAVKIDN-KSPEEQRDLLLKCASQRCHRN 527
E ++E A KI+ +S +E + C S + + N
Sbjct: 140 EVLEEICADKIETVESEKELIKAIRTCISSKQYGN 174
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 62.1 bits (144), Expect = 7e-11
Identities = 30/79 (37%), Positives = 51/79 (64%)
Frame = +3
Query: 255 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 434
AK LV ++KSQD E+GDGTT VV+LAG +L++ + +++G+HP + A ++A++
Sbjct: 90 AKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKH 149
Query: 435 IKEQAVKIDNKSPEEQRDL 491
+ + +D SPE +L
Sbjct: 150 LDAISDVVD-FSPENTTNL 167
Score = 59.7 bits (138), Expect = 4e-10
Identities = 27/70 (38%), Positives = 46/70 (65%)
Frame = +1
Query: 58 REGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLL 237
+E + G + S+I A + V + VRT+LGPRG+DK+++ +G+ ++NDGATI+ +
Sbjct: 24 QEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQM 83
Query: 238 DIIHPALKLL 267
++ H KLL
Sbjct: 84 EVEHQIAKLL 93
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +2
Query: 509 TAMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIKKVPGGALEDS 655
T++ SK++ + DHF+ I VDAVLS L + ++I + GG+++D+
Sbjct: 173 TSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDDT 224
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 52.0 bits (119), Expect = 8e-08
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +3
Query: 246 SPCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLA 425
+P A + A +QD GDGTTSV +L GE+LK+ + ++ EG+HP ++ A A
Sbjct: 69 NPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEA 128
Query: 426 I 428
+
Sbjct: 129 L 129
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +1
Query: 52 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 231
LL + Q L NI+A + D +++ LGP G K++VD G ++ DG ++
Sbjct: 4 LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63
Query: 232 LLDIIHP 252
+ I +P
Sbjct: 64 EMQIQNP 70
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 494 IEVCITAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLD--MIGIKKVPGGALEDS 655
+ V T++S+K+ + + + VVDA+L++ P P+D M+ I K+ + D+
Sbjct: 147 LNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQNRSASDT 202
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 33.9 bits (74), Expect = 0.022
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +3
Query: 255 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 434
A+ + D+A + GDGTT+ +L I V G +P L R ++ A +E
Sbjct: 102 ARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEF 161
Query: 435 IKEQAVKIDNKSPEE 479
+ QA K D + EE
Sbjct: 162 L--QANKRDITTSEE 174
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 133 AVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 243
AV TLGP+G + LI G I+ DG T+ + + +
Sbjct: 57 AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSL 93
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 366 EEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 500
E+ V +L RA +L I+ QA K DNKS E+R+ L+
Sbjct: 863 EKSVEENILARA---QYKLDIDGKVIQAGKFDNKSTPEEREAFLR 904
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 351 LKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 500
L+ E+ + +L RA +L ++ QA K DNKS E+R+ L+
Sbjct: 1309 LRLITEKSIEENILSRA---QYKLDLDGKVIQAGKFDNKSTPEEREAFLR 1355
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 614 IGIKKVPGGALEDSF 658
+ IKK+PGG+++D F
Sbjct: 525 VKIKKIPGGSIQDCF 539
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 628 LLDSNHVERQKWSVQRQDSINNNLREVI 545
L DSNHV+ QK +DS N L +++
Sbjct: 56 LFDSNHVDGQKGDSVLRDSANAPLTDLM 83
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 189 IVIYNQLVHTTGTQGGSDRIDNKL 118
++I+N LVH T T+ S+ + N L
Sbjct: 503 LIIFNNLVHETDTETDSETLLNDL 526
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 426 IEKIKEQAVKIDNKSPEEQRDLLLKCASQR 515
+EK+ E A K++ +PEE L K ASQ+
Sbjct: 195 VEKL-ENATKVEKSAPEELFASLKKSASQK 223
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 237 GYHSPCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTAS 416
G H P A+ +++ + + E G SV E+LKR V +G L R +R AS
Sbjct: 5 GDHVPQAEEVIETVEVVEEETGSSPLSVEDSLKEVLKR--ALVHDG-----LARGIREAS 57
Query: 417 R 419
+
Sbjct: 58 K 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,764
Number of Sequences: 5004
Number of extensions: 58644
Number of successful extensions: 201
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -