Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0042
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 126 2e-29
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 69 5e-12
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 62 4e-10
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 6e-10
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 62 6e-10
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 59 3e-09
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 38 0.010
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 35 0.055
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 34 0.096
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_48461| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 29 3.6
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 28 6.3
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 28 6.3
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096) 28 6.3
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 28 8.3
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_17072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 126 bits (303), Expect = 2e-29
Identities = 59/81 (72%), Positives = 68/81 (83%)
Frame = +1
Query: 25 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 204
+S QP I+LL+EGTD +QG PQL+SNI+ACQ + DAVRTTLGPRGMDKLIVD GKA I
Sbjct: 634 ASGPQPGIILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATI 693
Query: 205 SNDGATIMKLLDIIHPALKLL 267
SNDGATI+ LLDI+HPA K L
Sbjct: 694 SNDGATIINLLDIVHPAAKTL 714
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAE 296
P AKTLVDIAKSQDAE
Sbjct: 709 PAAKTLVDIAKSQDAE 724
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 77.0 bits (181), Expect = 1e-14
Identities = 46/74 (62%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Frame = +2
Query: 476 GTKRSPIEVCI-TAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALED 652
G R +E C TA+SSKLI QK+ F+K+VVDAV+ LD LLPLDMIG+KKV GGALED
Sbjct: 18 GEMRQLLERCAATALSSKLIATQKEFFAKMVVDAVMMLDE-LLPLDMIGMKKVSGGALED 76
Query: 653 SFPGFPEWAFKKTF 694
S AFKKTF
Sbjct: 77 SML-IEGVAFKKTF 89
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 423 AIEKIKEQAVKIDNKSPEEQRDLLLKCAS 509
AI++IKE AV + E R LL +CA+
Sbjct: 1 AIKRIKELAVHVKKNDAGEMRQLLERCAA 29
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/66 (48%), Positives = 49/66 (74%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P AK++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +HP +I A R A I
Sbjct: 17 PAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMI 76
Query: 429 EKIKEQ 446
+ +K+Q
Sbjct: 77 DILKQQ 82
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/66 (48%), Positives = 49/66 (74%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P AK++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +HP +I A R A I
Sbjct: 214 PAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMI 273
Query: 429 EKIKEQ 446
+ +K+Q
Sbjct: 274 DILKQQ 279
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 68.5 bits (160), Expect = 5e-12
Identities = 36/93 (38%), Positives = 55/93 (59%)
Frame = +3
Query: 228 EATGYHSPCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVR 407
++ G +P AK LV+++K QD EVGDGTTSV +L E+LK + V +HP+ ++ R
Sbjct: 69 KSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWR 128
Query: 408 TASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCA 506
+ + A EK E A + PE+ R+ L+ A
Sbjct: 129 KSVK-AAEKALEAAAVDHSSDPEKFREDLMNIA 160
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +1
Query: 46 ILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLI--VDHNGKAVISNDGA 219
+ +L +G ++ + + +S+ + D V++TLGP+GMDK++ NG ++NDGA
Sbjct: 6 VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65
Query: 220 TIMKLLDIIHPALKLL 267
TI+K + I +PA K+L
Sbjct: 66 TILKSIGIDNPAAKIL 81
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +2
Query: 494 IEVCITAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSF 658
+ + T +SSK++ Q +DHF+K+ VDAVL L L+ I I K GG + DSF
Sbjct: 157 MNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGS-GDLNAIQIIKKLGGGMVDSF 210
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Frame = +1
Query: 85 KPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDII 246
KPQ + +NI A + V DA+RT+LGP+GMDK+I NG I+NDGATI KL+D +
Sbjct: 21 KPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI-KLIDTV 75
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 61.7 bits (143), Expect = 6e-10
Identities = 34/86 (39%), Positives = 51/86 (59%)
Frame = +3
Query: 249 PCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 428
P A + +A +QD GDGTTS V++ GE+LK+ +V EG+HPR++ A + A+
Sbjct: 174 PTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKKAL 233
Query: 429 EKIKEQAVKIDNKSPEEQRDLLLKCA 506
E ++E VK+ S E RD L+ A
Sbjct: 234 EVLEE--VKV---SREMDRDTLINVA 254
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 494 IEVCITAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDM 613
I V T++ +K+ + D +++VVDAVL++ P P+D+
Sbjct: 251 INVAKTSLRTKVRTELADLLTEVVVDAVLTIRKPKKPIDL 290
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 61.7 bits (143), Expect = 6e-10
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Frame = +3
Query: 255 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 434
AK +V+++KSQD E+GDGTT VV+LAG +L+ + ++ G+HP + A+++A+E
Sbjct: 86 AKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEH 145
Query: 435 IKEQA----VKIDNKSPEEQRDL--LLKCASQRCHR 524
+ A V DNK Q + L RCHR
Sbjct: 146 MDSIADNFPVDKDNKESLIQTAMTTLGSKIVSRCHR 181
Score = 57.6 bits (133), Expect = 9e-09
Identities = 23/56 (41%), Positives = 41/56 (73%)
Frame = +1
Query: 100 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPALKLL 267
S+I A + V ++T+LGP+GMDK++V +G+ ++NDGATI+ ++++ H KL+
Sbjct: 34 SHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLM 89
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +2
Query: 482 KRSPIEVCITAMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIKKVPGGALED 652
K S I+ +T + SK++ + ++I VDAVLS L+ + ++I ++ GG L+D
Sbjct: 160 KESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVADLERKDVDFELIKVEGKEGGKLDD 219
Query: 653 S 655
+
Sbjct: 220 T 220
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/78 (41%), Positives = 46/78 (58%)
Frame = +3
Query: 273 IAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAV 452
++K QD EVGDGTTSV +LA E+LK + V +HP+ ++ R + + A EK E A
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVK-AAEKALEAAA 60
Query: 453 KIDNKSPEEQRDLLLKCA 506
+ PE+ RD L+ A
Sbjct: 61 VDHSSDPEKFRDDLMNIA 78
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +2
Query: 494 IEVCITAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSF 658
+ + T +SSK++ Q +DHF+K+ VDAVL L L+ I I K GG + DSF
Sbjct: 75 MNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGS-GDLNAIQIIKKLGGGMVDSF 128
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Frame = +2
Query: 509 TAMSSKLIHQQKDHFSKIVVDAVLSL------DTPLLPLDMIGIKKVPGGALEDS 655
TA+SSKLI QQ D F+ ++VDAV+++ P+ I + K GG+ ++S
Sbjct: 19 TALSSKLIGQQGDFFANMIVDAVMAVKRTGNKGEAKYPIKAINVLKAHGGSAKES 73
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 35.1 bits (77), Expect = 0.055
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 243
+ DAV TLGP+G + +I G I+ DG T+ K +++
Sbjct: 79 LADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIEL 118
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 240 YHSPCAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPR 386
Y + A+ + D+A + + E GDGTT+ +LA I V +G +P+
Sbjct: 122 YQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQ 170
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 34.3 bits (75), Expect = 0.096
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = +1
Query: 106 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPALKLL 267
+ CQ ++ + GP G+D ++ +G +I+N G+ I++ L + +P +++
Sbjct: 6 LQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMI 59
>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 333 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQ 446
GE + +PF+E+ +HP +I A R A I+ +K+Q
Sbjct: 2 GEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQ 39
>SB_48461| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 327
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 123 CCRCGQNHPGSPW-YGQADCRSQWKGGYIKRWC 218
C RCG+NHP S + +A C K G+I C
Sbjct: 92 CYRCGKNHPPSKCRFKEATCHYCKKKGHIVAKC 124
>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 28.7 bits (61), Expect = 4.8
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Frame = -2
Query: 380 VNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHKSFSAG*MISSSFMIVAPSFDI 201
++ F++KR +QN TG H+ SIA L + +H S G + S ++ +F +
Sbjct: 99 IDKFYSKR--HVQNKTGIKHF---SIAKCLALTVYPLHYCLSVGIPLLSVLNCLSVTFCL 153
Query: 200 TAFPL*STIS--LSIPRGPRVVLTASTTS*QALMLETSWGLPCVWSVP-SLSKSICGCIL 30
+ L T+ LSI P +L+ ++ S + C SV L S+C C L
Sbjct: 154 SIVCLSITVCPLLSITVCP--LLSVCYCPLLSVRYCLSVTVHCCLSVTVCLLLSVCYCPL 211
Query: 29 LDLFHCLS 6
L + +CLS
Sbjct: 212 LSVRYCLS 219
>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 375 VHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRD---LLLKCASQ 512
V P + + R A R+ K + DNK P+E+ D L KCAS+
Sbjct: 863 VRPTYMYKHCRLACRVCTPVKKHEGPPCDNKDPDEECDHWAKLGKCASR 911
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/30 (33%), Positives = 12/30 (40%)
Frame = +3
Query: 165 GQADCRSQWKGGYIKRWCNDHEATGYHSPC 254
G DC W GG +C H + H C
Sbjct: 1128 GSKDCHDGWYGGTCSIYCLPHNGSSGHYDC 1157
>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 269
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 108 QCLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWCNDH 227
QC + C+ G++ GSP +ADC GG ++ C H
Sbjct: 145 QCCRSVCKVGRDCVGSPCSSRADC-----GGPFEQSCCGH 179
>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
Length = 191
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 108 QCLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWCNDH 227
QC + C+ G++ GSP +ADC GG ++ C H
Sbjct: 67 QCCRSVCKVGRDCVGSPCSSRADC-----GGPFEQSCCGH 101
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 111 CLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWC 218
C TC C N SP+ GQ +C S + G ++ C
Sbjct: 142 CQGTC-DCKNNATCSPFTGQCNCTSGFTGDRCEKQC 176
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 93 ARLQHQCLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWCNDHEAT 236
+RLQH+C++ C CG++ SP + +W Y CN + T
Sbjct: 412 SRLQHKCVNLCYGCGES-DCSPLVPPPEQDHRWDWKYCPE-CNRYFRT 457
>SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 85 KPQLVSNINACQLVVDAVRTTLGPRGMD 168
K L+S I C LV +A +T+G +G D
Sbjct: 26 KKDLISEIRHCYLVSNAYPSTVGAKGFD 53
>SB_17072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 106 CWRRAGACPASGPFPLSVKVFAVAFC*ICFTVSRA 2
C R GACPA+ P+++K +V F FT A
Sbjct: 2 CNGRLGACPAAHTDPITIKTGSVQFKDSSFTSGAA 36
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,060,359
Number of Sequences: 59808
Number of extensions: 462217
Number of successful extensions: 1464
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -