Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0042
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 368 FNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHK 264
           +NK ++P+QN T + H   G    L  ++L N+++
Sbjct: 38  YNKLIRPVQNMTEKVHVNFG----LAFVQLINVNE 68


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -2

Query: 383 RVNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHKSFS 255
           ++ T+F+K    + N     +++GG    L   R C  ++ F+
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERFT 502


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -2

Query: 383 RVNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHKSFS 255
           ++ T+F+K    + N     +++GG    L   R C  ++ F+
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERFT 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,400
Number of Sequences: 438
Number of extensions: 3984
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)